G114480


Basic Information

Item Value
gene id G114480
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 29521807 ~ 29599080 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU154716
TGTGAGggaaaatcaacatttattccATGTATTCCTGATTTACTTCATGTATTCATAATCAATTATACTGATTAttcctgttaatcattcaatattcatcctgttaatcattcaatcagTATTTTATCATTGAGTGTTATGTGAACTTATATTCTCTGATAAGGCCATTCATTCAGACTTAAGGGCAAAGATTATAAAAGCAGCTTCTGCCTGGAGACTAGCGGGTCATAGCAAATGGTGTTttctgatttatgaattattctctCCTAAGGAATGGAAATTAAGTTTGCCTGGAAACTGTTTTGTCATAGTAAATAGAGCTttctgatttatgaattattcttgACTTTTGCTTATTCGTGCATTTTCGGTTCCTCTTTTCAAGAGAACATCTGTTCAGCATCCTTCCTCCTGTAGGCACGAGGCATGTACAAAAGTGCGAGTCAAGAGAGACTTGGGGCTCTCTGACTTCCTCATCTGCTATCGCTTGCTTGCTTGTATTTTTCCTTTTgcaacttcaaaataaaaactttctCCTTTTTGGCATCCCGGCTCGTTGACTGTCTTTGTCGATTTCCACGACActagctagata

Function

GO:

id name namespace
GO:0048882 lateral line development biological_process
GO:0048884 neuromast development biological_process
GO:0048925 lateral line system development biological_process

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04612 Antigen processing and presentation
ko04672 Intestinal immune network for IgA production
ko05168 Herpes simplex virus 1 infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU154716 True 595 lncRNA 0.37 2 29521807 29599080

Neighbor

gene id symbol gene type direction distance location
rbp7 rbp7,LOC107713528,LOC107666991,LOC107555975,LOC107708738 coding upstream 250358 29267706 ~ 29271449 (+)
h6pd h6pd coding upstream 262724 29245281 ~ 29259083 (+)
shmt2 shmt2,LOC103359782,LOC106515133 coding upstream 389744 29090843 ~ 29132063 (+)
nxph4 nxph4 coding upstream 436363 28994206 ~ 29085444 (+)
stac3 stac3 coding upstream 657024 28849141 ~ 28864783 (+)
LOC103032776 NA coding downstream 21280 29620360 ~ 29630245 (+)
LOC111193761 LOC108427564 coding downstream 31845 29630925 ~ 29638287 (+)
LOC103043238 pbrm1l,LOC108427561 coding downstream 83570 29682650 ~ 29697639 (+)
stau1 stau1 coding downstream 99520 29698600 ~ 29709786 (+)
LOC103032161 LOC108427567 coding downstream 113405 29712485 ~ 29728337 (+)
G114475 NA non-coding upstream 46240 29474846 ~ 29475567 (+)
G114438 NA non-coding upstream 237029 29230207 ~ 29284778 (+)
G114439 tardbp,LOC108427558,LOC105025427 non-coding upstream 239393 29281458 ~ 29282414 (+)
G114433 NA non-coding upstream 261121 29183414 ~ 29260686 (+)
G114402 NA non-coding upstream 536168 28931924 ~ 28985639 (+)
G114623 NA non-coding downstream 234116 29833196 ~ 29833502 (+)
G114627 NA non-coding downstream 240182 29839262 ~ 29839720 (+)
G114640 NA non-coding downstream 359518 29958598 ~ 29959049 (+)
G114643 NA non-coding downstream 370855 29969935 ~ 29970956 (+)
G114647 NA non-coding downstream 380534 29979614 ~ 29979838 (+)
LOC103044650 LOC108427558 other upstream 240496 29207743 ~ 29281311 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other upstream 2032285 27391014 ~ 27489522 (+)
G113979 snrpb,LOC101173217 other upstream 2169363 27347449 ~ 27352444 (+)
ube2o ube2o other upstream 4124824 25342153 ~ 25396983 (+)
G113642 acox1 other upstream 4259586 25261386 ~ 25262221 (+)
LOC111193669 NA other downstream 283291 29882371 ~ 29887978 (+)
G114698 NA other downstream 527255 30126335 ~ 30129896 (+)
G114841 NA other downstream 1251229 30850309 ~ 30880553 (+)
G115024 ngf,LOC103031633,LOC105909845 other downstream 2294205 31893285 ~ 31894351 (+)
LOC103031324 kcna3a,LOC108427600,LOC108271529,LOC107729772,LOC107666172,LOC107708155,LOC107554199,LOC107685799 other downstream 2353934 31953014 ~ 31962885 (+)

Expression


Co-expression Network