G114643


Basic Information

Item Value
gene id G114643
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 29969935 ~ 29970956 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU154912
AGCATCACAGCCCTTTGTATTCAAAAAAGCTTCCATGGCCTCCTTTGCAAGTTGTGTtcctttaaaatacttttaacaaaCTATTCTTTAGCAGACTCTTCTGGAAGCTCCTCCTCTTGTTCATGCTCAGTCTCAACCTGCTCAGTCTGGGCACTGTCTCCCTCCTCTTTTTCGGTCTCATTTGTtctgctgctgtctgtctgATCTGAAGCAGCGTGATCCTCCTCTGCAGCAGTTTTCGAATCTTGTTCTTTAGCATCATCAACATCCTCGGTCTCAGTTTTTTCCGCTTGTACATCATTTGAAAGTGACGAGCTCTCTGCTACAGCATGTTCCTCGACTTGTTCCTCAGCAAGTGTCTCCTCGATTTCATTCAAGTTCATCTTCGTCTCTTCTGGAAGACTCAGAGCCTCCTCAGATTGATTTGAGGGCAGGTCAGAGACCTCTGAATCAGAAGAAGTCTGAATCTTCTCTGCGTCACGTTCCTTTTGATGTTCCTCATTTACTTCTAGTGGAATAGCACTGTGTTCCTCTTCTCCTGCAGTTACTCCTTGTTTTTCGTTTaattcttcctcttctttcctTGGTTCCTCCTTGGTTACATTTTCCTCCACTTCTGCTTCTGACTCTTGTTcctttacttttactcttttcctCCCTTTTTTGTCTTGTTCTCCAGAAACATTCccttcttgttcttgttctccAGAAACATTGTCTTCTTTTTCTGCATCCTGTTCTTCAGCAACTCCTTTTTTCTCAATCACTTTGTTGTCCTCTTGTACTCCTTGTTCTTTTGTaactttctcctcctcttttgcTTCTGCTTGAACTGTAAGTTCCTTCTCTTCAGTAGGTTCAGTAGGTTCTGGTTCTTCTTTACGGGCTTTCTTTTTGTCATCAGTTGTGCCCACTTGCTCCCCGTCATCTGCTTTTTCTGCTTGCTCCTCTACCTTGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154912 True 959 lncRNA 0.43 2 29969935 29970956

Neighbor

gene id symbol gene type direction distance location
LOC103041068 NA coding upstream 19974 29924349 ~ 29949961 (+)
LOC103040768 LOC103040768,LOC108427541 coding upstream 52182 29899564 ~ 29917753 (+)
LOC103032161 LOC108427567 coding upstream 241598 29712485 ~ 29728337 (+)
stau1 stau1 coding upstream 260149 29698600 ~ 29709786 (+)
LOC103043238 pbrm1l,LOC108427561 coding upstream 272296 29682650 ~ 29697639 (+)
LOC103038582 NA coding downstream 563171 30534127 ~ 30574692 (+)
padi2 padi2,LOC100380857 coding downstream 936373 30907329 ~ 30931217 (+)
LOC103036390 LOC108427585,LOC108272160,LOC107655778,LOC107708163 coding downstream 1214511 31185467 ~ 31231831 (+)
LOC103036086 LOC103036086 coding downstream 1263227 31234183 ~ 31263040 (+)
LOC103029625 LOC107708099,LOC108271793,LOC107655781,LOC107666178,LOC107549309,LOC107729733,LOC107569802 coding downstream 1299069 31270025 ~ 31284839 (+)
G114640 NA non-coding upstream 10886 29958598 ~ 29959049 (+)
G114627 NA non-coding upstream 130215 29839262 ~ 29839720 (+)
G114623 NA non-coding upstream 136433 29833196 ~ 29833502 (+)
G114480 NA non-coding upstream 370855 29521807 ~ 29599080 (+)
G114474 NA non-coding upstream 412244 29458027 ~ 29557691 (+)
G114647 NA non-coding downstream 8658 29979614 ~ 29979838 (+)
G114676 LOC108427574 non-coding downstream 90222 30061178 ~ 30111760 (+)
G114712 NA non-coding downstream 254147 30225103 ~ 30225315 (+)
G114713 NA non-coding downstream 262790 30233746 ~ 30235372 (+)
LOC111193762 NA non-coding downstream 619400 30590356 ~ 30603509 (+)
LOC111193669 NA other upstream 81957 29882371 ~ 29887978 (+)
LOC103044650 LOC108427558 other upstream 688624 29207743 ~ 29281311 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other upstream 2480413 27391014 ~ 27489522 (+)
G113979 snrpb,LOC101173217 other upstream 2617491 27347449 ~ 27352444 (+)
ube2o ube2o other upstream 4572952 25342153 ~ 25396983 (+)
G114698 NA other downstream 155379 30126335 ~ 30129896 (+)
G114841 NA other downstream 879353 30850309 ~ 30880553 (+)
G115024 ngf,LOC103031633,LOC105909845 other downstream 1922329 31893285 ~ 31894351 (+)
LOC103031324 kcna3a,LOC108427600,LOC108271529,LOC107729772,LOC107666172,LOC107708155,LOC107554199,LOC107685799 other downstream 1982058 31953014 ~ 31962885 (+)
LOC103027407 prkag1,LOC107708574,LOC107686771,LOC107752861,LOC107690822,LOC107554882,LOC107582314 other downstream 2158349 32129305 ~ 32143822 (+)

Expression


Co-expression Network