LOC103025619 (LOC103025619,LOC108427613,LOC108272187,LOC104930301,LOC103373509,LOC100704252,LOC104955611)


Basic Information

Item Value
gene id LOC103025619
gene name LOC103025619,LOC108427613,LOC108272187,LOC104930301,LOC103373509,LOC100704252,LOC104955611
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 32245266 ~ 32320655 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU155472
cattcacCTTTAACAAAAGTAGAGCTGCATTATAGTGCAGAACACACCCAGCTATGAGAAATGGGTGTATTCATCACACCACTGGAGCTGGAGGGATACTGACACCTCCtcgcctcacacacacacacacacacacacacacacacacacatacacacacacacacacacagaataacaATAACATCAGTTTGGGTGGGAGGAGGGCTGCACAAGTGGAGGGTTGCCTGGGTGTGTCATTCCAGGCTGATTTAACGTTTACAATGTATTCGCATTCACGTTACGTTACGAAAGGATCTCTGTTTCCGTAGAAAAGGGAAAATGTGTGAAGACCAACAATGAACATATCAGTATGTGATTAAATGGGTAGGTGATACCCATCATACCCTCTTACATAAATATTTAGCACTTAATTAAGTTAGAACCTAGTGTTTTGGTGATTGTTGAACCAAAGTAGTCCTTGTAAAACAGTCAAATGAAATGTAACACTACATATTAATGCATCCTCTCTAGATGTACGAACTCCTGAAATATCTCTGTAGAAAGTTTACTGCTTATCAGTAAAGGGGCTTCCTTTGCTACGAATTGTGATGTATAaatctatgtatgtatataactTTTATGTAACTTAAATGTAATGATGTGATGCCCCCCTTGCAAACATTGTTATGTAGAAATAACAGGAATGCGTGTCGATATGGAAAAAAGCTGAATCTCAAAGCCATATTGTGGAGTGCCATTGTTAATGTTTTCTGTCACTTTTTGACTGTTGTTTAAGTTCTTTTATTCTGCATCTACTTATTGTTACTAAGGAGGTTCATCATTTGCAATAATACTGACATgctatttgtcttttttttctcggttacaataaaacaatgtttca
>XM_007253324.3
TCTAACGGTGAGAGCAGCCCGGTAACGTTACATCCCGCAGACTTGAGCCGCTGGGTTAAAGACAGAGAGTGGTGTATCGCAGTTAGAGAATCGTTGAGAACATTAAGTCCCCGGTCCGCCATGTTCAGGAATTAGTTGATGTGTGTGTCCAGTGTAATGGTGGCGCTGTCCATCTCCCGCCTTTAAACATCCCTGACCCGGAACCGCGCCATGTGACTTCAGCACTATGGAGTCTCTGGTGACGCGTATTCGCACGGAAATATGGCATAGCTAGCGCTAAACCTCTTCAACTGTACGCTGCAGCTTATTCACACGGAGAGCTGTAAACCGTAGCGGGCAGGAAGCGTGTTCAGCCGGGGAAAGGGTCAGAGTCGCGGGTTGAGCGGTAACACGGCCCGGGGCTCAGTGCTGGCTGGGGACGGgcgctagctaacgttagcttctcCACGCATCATCAGTGCTATAAAGATGGAGTCTTCAGAGCAGTCTCCTCCAGATTCAGGAGCTCAGGAAGTGAACCCTGTGTTCCTTCAGCAGCTGAGAGAGCTAGATATTCCAGAGGAAGCTGCCAAACAGGCACTCCTACACACTAGGAATGTGTCTGCTGAGGAGGCGGCCATGTATTACTTCAACAAACTGGAGAACGAGgaagaaggagatgaggacATGATGTTCAAGATGGTTTTTGTTGTGAACATGGAGCTGTCCATGGGAGTTGGGAAGGTGGCGGCACAGGTGGGCCATGCAGCTGTGGGTCTGTACCAGGCCATGCAGGAGAAGAACACCTGGAGGGAGATGGCATGGAAGTGGGATCATGCAGGGGCTAAGAAGATTGTGCTACAGGGCACCAACATGGCACACCTCTTGGAGTTGCAGGCTCTTGCTATGAGTCTAAGTCTCCCTACCAAACTGATACAAGATGCTGGTCTCACTCAGGTGGAGCCAGGCTCTAGCACTGTGCTGGCCATTATGGGAGAGGAGGAGATGGTCAATAATGTCACAGGCAGTCTGAAATTGCTTTGAACGCTGAGGGAAGGAAAGACAACTGTGGAAATCTGAGTACATAATGTACCAGTGAGTGTCCACAGGGGGGCAGCATAGCCCCAGAGCAGCGAGGTTCTCAACATGTTAAAAAACAATCCCACATAAAATCCCATAGCATTCACATACTCCTACTGACTTGCACTGactctcacttacacacacacacacacacagaataacaATAACATCAGTTTGGGTGGGAGGAGGGCTGCACAAGTGGAGGGTTGCCTGGGTGTGTCATTCCAGGCTGATTTAACGTTTACAATGTATTCGCATTCACGTTACGTTACGAAAGGATCTCTGTTTCCGTAGAAAAGGGAAAATGTGTGAAGACCAACAATGAACATATCAGTATGTGATTAAATGGGTAGGTGATACCCATCATACCCTCTTACATAAATATTTAGCACTTAATTAAGTTAGAACCTAGTGTTTTGGTGATTGTTGAACCAAAGTAGTCCTTGTAAAACAGTCAAATGAAATGTAACACTACATATTAATGCATCCTCTCTAGATGTACGAACTCCTGAAATATCTCTGTAGAAAGTTTACTGCTTATCAGTAAAGGGGCTTCCTTTGCTACGAATTGTGATGTATAaatctatgtatgtatataactTTTATGTAACTTAAATGTAATGATGTGATGCCCCCCTTGCAAACATTGTTATGTAGAAATAACAGGAATGCGTGTCGATATGGAAAAAAGCTGAATCTCAAAGCCATATTGTGGAGTGCCATTGTTAATGTTTTCTGTCACTTTTTGACTGTTGTTTAAGTTCTTTTATTCTGCATCTACTTATTGTTACTAAGGAGGTTCATCATTTGCAATAATACTGACATgctatttgtcttttttttctcggttacaataaaacaatgtttcagTGTTCAGAA

Function

NR:

description
probable peptidyl-tRNA hydrolase 2

GO: NA

KEGG:

id description
K04794 PTH2; peptidyl-tRNA hydrolase, PTH2 family

RNA

RNA id representative length rna type GC content exon number start site end site
TU155472 False 885 lncRNA 0.38 2 32245266 32320645
XM_007253324.3 True 1941 mRNA 0.46 7 32314026 32320655

Neighbor

gene id symbol gene type direction distance location
LOC103027720 pa2g4,pa2g4a,LOC108427609,LOC108272117,LOC107713111,LOC107678215,LOC107551923 coding upstream 117393 32119124 ~ 32127873 (+)
erbb3 LOC108427608 coding upstream 127325 32093191 ~ 32117941 (+)
LOC103028359 arf3,ARF3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 coding upstream 159342 32075824 ~ 32085924 (+)
LOC103030054 NA coding upstream 207087 32032175 ~ 32038179 (+)
LOC103030365 LOC108427546,LOC107708091,LOC107554173,LOC107596858,LOC107666053,LOC108271567,LOC107729737,LOC107685839 coding upstream 233397 32003183 ~ 32011869 (+)
setd5 setd5 coding downstream 3407 32324062 ~ 32356438 (+)
mtmr14 mtmr14,LOC106583633,LOC107716897 coding downstream 108326 32428981 ~ 32448136 (+)
cpne9 cpne9,LOC106583634 coding downstream 130081 32450736 ~ 32589514 (+)
zxdc NA coding downstream 271205 32591860 ~ 32600835 (+)
LOC111193763 NA coding downstream 284302 32604957 ~ 32605732 (+)
G115093 NA non-coding upstream 78214 32156019 ~ 32167052 (+)
G115030 NA non-coding upstream 313134 31931758 ~ 31932132 (+)
G115029 NA non-coding upstream 314889 31930088 ~ 31930377 (+)
G115028 NA non-coding upstream 327681 31917366 ~ 31917585 (+)
G115027 NA non-coding upstream 327962 31916970 ~ 31917304 (+)
G115127 NA non-coding downstream 256723 32577378 ~ 32609865 (+)
G115137 NA non-coding downstream 295308 32615963 ~ 32618034 (+)
G115145 NA non-coding downstream 375649 32696304 ~ 32696897 (+)
G115278 txnrd3,txnrd1,LOC107705897,LOC107705821,LOC106565239 non-coding downstream 465227 32785882 ~ 32795500 (+)
G115288 NA non-coding downstream 480244 32800899 ~ 32801184 (+)
LOC103027407 prkag1,LOC107708574,LOC107686771,LOC107752861,LOC107690822,LOC107554882,LOC107582314 other upstream 101444 32129305 ~ 32143822 (+)
LOC103031324 kcna3a,LOC108427600,LOC108271529,LOC107729772,LOC107666172,LOC107708155,LOC107554199,LOC107685799 other upstream 282381 31953014 ~ 31962885 (+)
G115024 ngf,LOC103031633,LOC105909845 other upstream 350915 31893285 ~ 31894351 (+)
G114841 NA other upstream 1364713 30850309 ~ 30880553 (+)
G114698 NA other upstream 2115370 30126335 ~ 30129896 (+)
G115133 NA other downstream 289794 32610449 ~ 32611203 (+)
G115510 grm7,LOC108271537,LOC107668159,LOC107708172,LOC107569297,LOC108427575 other downstream 1775262 34095917 ~ 34096865 (+)
rbm38 rbm38,LOC103039930,LOC108436278 other downstream 2010343 34330998 ~ 34340744 (+)
LOC103038162 NA other downstream 2059642 34380297 ~ 34391959 (+)
G115736 NA other downstream 2600046 34920701 ~ 35008942 (+)

Expression


Co-expression Network