G115557


Basic Information

Item Value
gene id G115557
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 34210118 ~ 34210874 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU156093
CCAAGAAGGTGTTTATACCCCCACACTTACCAACAGGCTTTATCAAATACATTTGTCAACTATCCTCTATTATCATATGTCCATTTTATGACATTAAAGTAATTACTTTCCATATACAGAGGAGAAAGAAAtaagtttattctttatttcctACATTTCACATTCATCTGATTAGTTACAACAAGGCAATAAGGCACAAACCTTTATCCTTCTAAGCAGcttagtgtagtagtagtagtagtagtaCTCTGCACAATACCTTTGGGACAAGCTGAACCGACACTGTTTGTGATTTAGAACTATTTGTCCAACATCCAGGCTCTAGcttctgacctcactaatgcgaAACCCCCAAACATCTAGAGTAAAGCCTTCCAAGAAGCAAAGAGTCTGTTACTGCAGAAAAAGGGGACTCAAACTTCCTGTTAACTGCCTTGATATccaaagtaaattaaatgaccAGCTGTTCACAGActtttggacatacagtgtatATTTTATCATTGTTTGGTCAGTCAACACCGAAATCCACGGGCTGTCTCTGTGTTCTCACACACTTCTGCTTGTATATTTCTGGCTGTAGTCCCCCTGGCTTCATTGCCTGAACTGGAGATATGCTTCTGTAAACTTGACTACACTCTTCCTCTTTCATGACATCACTTCCAGCAGATAATGATATTGGGGTCATTTTCTAAGCGTTCATCCAGTTCCTTGTAA

Function

NR:

description
PREDICTED: sodium bicarbonate cotransporter 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156093 True 717 lncRNA 0.39 2 34210118 34210874

Neighbor

gene id symbol gene type direction distance location
LOC103044649 LOC108427633,LOC108271939 coding upstream 443034 33730438 ~ 33767084 (+)
LOC103044965 NA coding upstream 483501 33676057 ~ 33726617 (+)
LOC103045271 myl9,LOC103045271,LOC103386121,LOC100697131,LOC106565219 coding upstream 802651 33398008 ~ 33407467 (+)
LOC103021538 NA coding upstream 1463150 32729339 ~ 32746968 (+)
LOC103022276 LOC103022276,LOC108272091,LOC108427619,LOC105901876,LOC101480024,LOC100704523,LOC107586352 coding upstream 1481861 32710506 ~ 32728257 (+)
thumpd3 thumpd3 coding downstream 6278 34217152 ~ 34225638 (+)
LOC103027408 LOC108436255,LOC108271893 coding downstream 16469 34227343 ~ 34244865 (+)
LOC103041067 LOC108436281,LOC108271998,LOC105904609,LOC106565586 coding downstream 36057 34246931 ~ 34316726 (+)
rae1 rae1 coding downstream 111078 34321952 ~ 34328462 (+)
LOC103039118 NA coding downstream 150743 34361617 ~ 34367615 (+)
G115512 NA non-coding upstream 93292 34116398 ~ 34116826 (+)
G115511 NA non-coding upstream 95840 34113596 ~ 34114278 (+)
G115443 NA non-coding upstream 541143 33668724 ~ 33668975 (+)
G115374 LOC108427631 non-coding upstream 740950 33440835 ~ 33469168 (+)
G115349 NA non-coding upstream 783253 33423676 ~ 33426865 (+)
trnaf-gaa_1 NA non-coding downstream 216594 34427468 ~ 34427540 (+)
G115614 NA non-coding downstream 461979 34672853 ~ 34686380 (+)
G115619 NA non-coding downstream 477358 34688232 ~ 34734927 (+)
G115755 NA non-coding downstream 992043 35202917 ~ 35204176 (+)
G115757 NA non-coding downstream 1026746 35237620 ~ 35238160 (+)
G115510 grm7,LOC108271537,LOC107668159,LOC107708172,LOC107569297,LOC108427575 other upstream 113253 34095917 ~ 34096865 (+)
G115133 NA other upstream 1598915 32610449 ~ 32611203 (+)
LOC103025619 LOC103025619,LOC108427613,LOC108272187,LOC104930301,LOC103373509,LOC100704252,LOC104955611 other upstream 1889463 32245266 ~ 32320655 (+)
LOC103027407 prkag1,LOC107708574,LOC107686771,LOC107752861,LOC107690822,LOC107554882,LOC107582314 other upstream 2066296 32129305 ~ 32143822 (+)
LOC103031324 kcna3a,LOC108427600,LOC108271529,LOC107729772,LOC107666172,LOC107708155,LOC107554199,LOC107685799 other upstream 2247233 31953014 ~ 31962885 (+)
rbm38 rbm38,LOC103039930,LOC108436278 other downstream 120124 34330998 ~ 34340744 (+)
LOC103038162 NA other downstream 169423 34380297 ~ 34391959 (+)
G115736 NA other downstream 709827 34920701 ~ 35008942 (+)
LOC111193767 NA other downstream 846276 35057150 ~ 35130073 (+)
LOC103023619 cadps,LOC106953609 other downstream 1079954 35290828 ~ 35363640 (+)

Expression


Co-expression Network