G115614


Basic Information

Item Value
gene id G115614
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 34672853 ~ 34686380 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU156174
aagagatttagctatttataggtatatgtttgagtaaaatgaacattgttgttttattctatgaactacagacaaaatttctcccaaattccataaaataatgttatttaaagcatttatttgcagaaaatgaaacaaaaaaagatgcagagttttcagaaagttcatattcataaagttttcaagagttcagaaatcaatatttggatgtggaataaccctgctttttaatcacagttttcatgcatcttggcatattctcctccaccattcttacacactgcttttggataactttactcctggcgcaaaaaatcaagcagttcagtttggtttgatggcttgtgatcatataGCTTGCTATGAGCACTCCTACACTACATCAAAATATGCAGGAATATTTGAGCTGCATGGGATGATACTGTATATCAcaaacaccattaggaacctctacaactttacAACAAATGTTAGGCATATGGCATGTTTACGTTTCACGCTACTTATTGCCCCTTTCAGTCtacatttttaaccatttcatTGAAATCAAACAATTTTTCATTAAAACCATGGGCTTATTCGTTGCTGGaataaaaacctgcagccacaccagccaatcacagatgAGTTTAGTCACCCctatatacaaatacaaataatttacaaattaaatcacCTGGTCAAATTTGAGGTGTCTCTTAGCTGCTCTTTTGTAATCGTTTATTAAGTTTCTTGAAACTACTTATTGTATCTTTAATGAATCACAAAAAAGCTAAGTTTCATGACAAATCACCCTTTTCAGGGCTTTGGATTAAAATAGTAACTAACACAATCCAAGCACAAAGGATTTTCGAGCTTTGTATTGTGTTATCATACAATGTAATTGATGCCTGTGCTGCTTTCTCTGCTTTTGAAGTTTATCTTATTCCTAAAGTGGACAAAATACTCATAAAATTATAACTAATAAACCTTAAATATTTATCCACACAATAATCTGTTAATCTTTTATAATCTGTTATTATTTATGAAACAATGTGTTCTGTAGATTAAAAATTGTAAGAATGAATGAATTGATAAATTGATTATTTTCATTGTCAGTTTTTGTAGGTCTGTCTACACATAATTATGGAGTATAATGATGGTAAAGGTTGTTATTCTGGTTAATAACTTCTTCTTTTAATCATATGGTCTTTATAAAACACTCTCGTCCTTCTGCATGTGACCGACGTGTTTGTTGTTGATAACAGacgtctttaaaaaaaaaatgtatgaacaaAAGGATTAAAACGGCAGTGTAATCTCTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156174 True 1305 lncRNA 0.31 2 34672853 34686380

Neighbor

gene id symbol gene type direction distance location
fancd2 fancd2,LOC107749611,LOC107666962,LOC103399082 coding upstream 108114 34543069 ~ 34564739 (+)
usp4 usp4,LOC106583188 coding upstream 134281 34525267 ~ 34538572 (+)
emc3 emc3,LOC107667035,LOC107584459,LOC101173295 coding upstream 148767 34518790 ~ 34524086 (+)
LOC103036990 sec61a1,LOC103036990,LOC108436273,LOC103023094,LOC102228108,LOC108440718,LOC106518493 coding upstream 157044 34510283 ~ 34515809 (+)
LOC103037522 ip6k2a,LOC108436274,LOC107657877,LOC107713495,LOC107666997,LOC108272115,LOC107750247 coding upstream 180426 34486319 ~ 34492427 (+)
LOC103035135 grm2,grm2a,LOC107657935,LOC107673619,LOC107567094 coding downstream 3483 34689863 ~ 34755303 (+)
parp3 parp3,LOC107749614,LOC107673445 coding downstream 75203 34761583 ~ 34772935 (+)
LOC103034490 LOC108436251,LOC107658083,LOC107750281,LOC107584511,LOC107749617,LOC107567083,LOC107673479 coding downstream 90918 34777298 ~ 34779765 (+)
LOC103023460 NA coding downstream 111865 34798245 ~ 34804281 (+)
cav3 cav3,LOC107749619,LOC107584510,LOC107750282 coding downstream 129598 34815978 ~ 34823709 (+)
trnaf-gaa_1 NA non-coding upstream 245313 34427468 ~ 34427540 (+)
G115557 NA non-coding upstream 461979 34210118 ~ 34210874 (+)
G115512 NA non-coding upstream 556027 34116398 ~ 34116826 (+)
G115511 NA non-coding upstream 558575 34113596 ~ 34114278 (+)
G115443 NA non-coding upstream 1003878 33668724 ~ 33668975 (+)
G115619 NA non-coding downstream 1852 34688232 ~ 34734927 (+)
G115755 NA non-coding downstream 516537 35202917 ~ 35204176 (+)
G115757 NA non-coding downstream 551240 35237620 ~ 35238160 (+)
G115764 NA non-coding downstream 594229 35280609 ~ 35280927 (+)
G115765 NA non-coding downstream 602263 35288643 ~ 35289248 (+)
LOC103038162 NA other upstream 280894 34380297 ~ 34391959 (+)
rbm38 rbm38,LOC103039930,LOC108436278 other upstream 332109 34330998 ~ 34340744 (+)
G115510 grm7,LOC108271537,LOC107668159,LOC107708172,LOC107569297,LOC108427575 other upstream 575988 34095917 ~ 34096865 (+)
G115133 NA other upstream 2061650 32610449 ~ 32611203 (+)
LOC103025619 LOC103025619,LOC108427613,LOC108272187,LOC104930301,LOC103373509,LOC100704252,LOC104955611 other upstream 2352198 32245266 ~ 32320655 (+)
G115736 NA other downstream 234321 34920701 ~ 35008942 (+)
LOC111193767 NA other downstream 370770 35057150 ~ 35130073 (+)
LOC103023619 cadps,LOC106953609 other downstream 604448 35290828 ~ 35363640 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other downstream 867221 35553601 ~ 35559726 (+)
G115917 NA other downstream 956494 35642874 ~ 35676035 (+)

Expression


Co-expression Network