G115619


Basic Information

Item Value
gene id G115619
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 34688232 ~ 34734927 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU156179
aagagccacggtatccagggtaatgtcagcataccaccaagaaggaccaaccacatctaacaggattaactgtggacgctgtaagaggaagctgtctgaaagtgatgttcgggtgataacccggattgtatccaaaaaacataaaaccatggctgcccaaatcacgtcagaattcaatgtgcacctcaactctcctgtttccaccagaac

Function

GO:

id name namespace
GO:0022857 transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156179 True 210 lncRNA 0.46 2 34688232 34734927

Neighbor

gene id symbol gene type direction distance location
LOC103036389 LOC107749613,LOC107673607,LOC107584457,LOC107750253,LOC108436268,LOC107567068 coding upstream 3201 34565966 ~ 34685031 (+)
fancd2 fancd2,LOC107749611,LOC107666962,LOC103399082 coding upstream 123493 34543069 ~ 34564739 (+)
usp4 usp4,LOC106583188 coding upstream 149660 34525267 ~ 34538572 (+)
emc3 emc3,LOC107667035,LOC107584459,LOC101173295 coding upstream 164146 34518790 ~ 34524086 (+)
LOC103036990 sec61a1,LOC103036990,LOC108436273,LOC103023094,LOC102228108,LOC108440718,LOC106518493 coding upstream 172423 34510283 ~ 34515809 (+)
parp3 parp3,LOC107749614,LOC107673445 coding downstream 26656 34761583 ~ 34772935 (+)
LOC103034490 LOC108436251,LOC107658083,LOC107750281,LOC107584511,LOC107749617,LOC107567083,LOC107673479 coding downstream 42371 34777298 ~ 34779765 (+)
LOC103023460 NA coding downstream 63318 34798245 ~ 34804281 (+)
cav3 cav3,LOC107749619,LOC107584510,LOC107750282 coding downstream 81051 34815978 ~ 34823709 (+)
hemk1 NA coding downstream 519169 35254096 ~ 35269371 (+)
G115614 NA non-coding upstream 1852 34672853 ~ 34686380 (+)
trnaf-gaa_1 NA non-coding upstream 260692 34427468 ~ 34427540 (+)
G115557 NA non-coding upstream 477358 34210118 ~ 34210874 (+)
G115512 NA non-coding upstream 571406 34116398 ~ 34116826 (+)
G115511 NA non-coding upstream 573954 34113596 ~ 34114278 (+)
G115755 NA non-coding downstream 467990 35202917 ~ 35204176 (+)
G115757 NA non-coding downstream 502693 35237620 ~ 35238160 (+)
G115764 NA non-coding downstream 545682 35280609 ~ 35280927 (+)
G115765 NA non-coding downstream 553716 35288643 ~ 35289248 (+)
G115774 NA non-coding downstream 587035 35321962 ~ 35349945 (+)
LOC103038162 NA other upstream 296273 34380297 ~ 34391959 (+)
rbm38 rbm38,LOC103039930,LOC108436278 other upstream 347488 34330998 ~ 34340744 (+)
G115510 grm7,LOC108271537,LOC107668159,LOC107708172,LOC107569297,LOC108427575 other upstream 591367 34095917 ~ 34096865 (+)
G115133 NA other upstream 2077029 32610449 ~ 32611203 (+)
LOC103025619 LOC103025619,LOC108427613,LOC108272187,LOC104930301,LOC103373509,LOC100704252,LOC104955611 other upstream 2367577 32245266 ~ 32320655 (+)
G115736 NA other downstream 185774 34920701 ~ 35008942 (+)
LOC111193767 NA other downstream 322223 35057150 ~ 35130073 (+)
LOC103023619 cadps,LOC106953609 other downstream 555901 35290828 ~ 35363640 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other downstream 818674 35553601 ~ 35559726 (+)
G115917 NA other downstream 907947 35642874 ~ 35676035 (+)

Expression


Co-expression Network