LOC111193767


Basic Information

Item Value
gene id LOC111193767
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35057150 ~ 35130073 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU156347
gatttcgctatttataggtatatgtttgagtaaaatgaacattgttgttttattctataaactatgaacaacttccaaaattctcccaaattccacataaaaatactgtcatttagagcatttatttgcagaaaatgagaaatggctgaaataacaaaaaagatgcagagctttcagacatgcatcttggcatgttctcctccactaatCTTACAtgtgcttttggatgactttataccactcctggtgcaaaatttcaagcaggtcagcttggtttgatggcttgtgatcatccatcttcctcttgattatattacagaggttttcaatttggtaaaataaaaaaaactcatttttttaaaagtagtttcttattttttccagagctgtatatctgtgcCACCAAGCCTTTCTAGACAAAGCAAGGCTTTATGCTCACAAAACTACAACTAAATATCATGACCtaataatagtgtgtgtgtggggttgtgtgtgtgtgtg
>XR_002650708.1
tgtgtgtgtgtgtGTTTGtgtgtgtgtgtgtatctcctCACTGTCTAAAGAGCATGTACCTTTAGCAcctcattttttacatttagtttactacattgtTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156347 True 501 lncRNA 0.34 3 35072803 35130073
XR_002650708.1 False 101 ncRNA 0.37 3 35057150 35076626

Neighbor

gene id symbol gene type direction distance location
cav3 cav3,LOC107749619,LOC107584510,LOC107750282 coding upstream 233441 34815978 ~ 34823709 (+)
LOC103023460 NA coding upstream 252869 34798245 ~ 34804281 (+)
LOC103034490 LOC108436251,LOC107658083,LOC107750281,LOC107584511,LOC107749617,LOC107567083,LOC107673479 coding upstream 277385 34777298 ~ 34779765 (+)
parp3 parp3,LOC107749614,LOC107673445 coding upstream 284215 34761583 ~ 34772935 (+)
LOC103035135 grm2,grm2a,LOC107657935,LOC107673619,LOC107567094 coding upstream 301847 34689863 ~ 34755303 (+)
hemk1 NA coding downstream 124023 35254096 ~ 35269371 (+)
LOC103022280 LOC103022280,LOC108436247,LOC108271634 coding downstream 332727 35462800 ~ 35471205 (+)
LOC103021651 slc6a13,LOC108413697,LOC107567077,LOC107721195,LOC107584422,LOC108271735 coding downstream 372983 35503056 ~ 35523915 (+)
LOC103046487 NA coding downstream 452350 35582423 ~ 35594235 (+)
trub2 trub2 coding downstream 486251 35616324 ~ 35620073 (+)
G115619 NA non-coding upstream 322223 34688232 ~ 34734927 (+)
G115614 NA non-coding upstream 370770 34672853 ~ 34686380 (+)
trnaf-gaa_1 NA non-coding upstream 629610 34427468 ~ 34427540 (+)
G115557 NA non-coding upstream 846276 34210118 ~ 34210874 (+)
G115512 NA non-coding upstream 940324 34116398 ~ 34116826 (+)
G115755 NA non-coding downstream 72844 35202917 ~ 35204176 (+)
G115757 NA non-coding downstream 107547 35237620 ~ 35238160 (+)
G115764 NA non-coding downstream 150536 35280609 ~ 35280927 (+)
G115765 NA non-coding downstream 158570 35288643 ~ 35289248 (+)
G115774 NA non-coding downstream 191889 35321962 ~ 35349945 (+)
G115736 NA other upstream 48208 34920701 ~ 35008942 (+)
LOC103038162 NA other upstream 665191 34380297 ~ 34391959 (+)
rbm38 rbm38,LOC103039930,LOC108436278 other upstream 716406 34330998 ~ 34340744 (+)
G115510 grm7,LOC108271537,LOC107668159,LOC107708172,LOC107569297,LOC108427575 other upstream 960285 34095917 ~ 34096865 (+)
G115133 NA other upstream 2445947 32610449 ~ 32611203 (+)
LOC103023619 cadps,LOC106953609 other downstream 160755 35290828 ~ 35363640 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other downstream 423528 35553601 ~ 35559726 (+)
G115917 NA other downstream 512801 35642874 ~ 35676035 (+)
G115931 NA other downstream 600306 35730379 ~ 35734359 (+)
tomm6 NA other downstream 828470 35958543 ~ 35967878 (+)

Expression


Co-expression Network