G115755


Basic Information

Item Value
gene id G115755
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35202917 ~ 35204176 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU156356
agacagcaagggtgaatcccatttctccccttggccctaccccttacccctacccctctgttttgcgcgtgcacgtcaaggggtaggggtgtcccgattcctgttaggatgaagtggtaggggtaaggggtagggctagttagcccttcaaacggagattttccagacccacacttcgtaccgaggggtatgagaatgactggcaagatggcggaacaagcgaccaaagaaagtattttccatgttaaaaattacgattagcactgtattacggctgaattcttcgtaacaagcataaaaagttcgctagtagttcgtttcggtagctagctagctagctaactttcccgttccaccttaaatggtgcaacagacggcaggcgctaccgcatttaaggcggaacggaaaaaaataaatcaaataaaaaataatcagagctaatttcagctccccatcacagaggaattaaggaatgccccctttctgaacacatacaatgccctaaagttaactagttaaccagcagctaggctactgaactttagcgctccactgctatcatcacatcagcccagcagggtcacctacacaccaccgctagtagcctggtcataaatcagtgctatttatttatgtatttattgttcattgacaaacgtcattgtgatataccagtgattcctctgtcactgaggacccatattcttgcacattatattgtttttgtaacacattacctgctccaggaccagtgttgggaaccagtgtgatatacaatttctagtatattatggaggctattttcaataagattcacctttcaccgggtgcttgaagggttgtcccaattcctaggggtaggattttaccccttccccttgtaactccgttccaaggggaaggattacactcgaaaagaaggggtaggggtaaggggtagggccaaggggagaaatgggattcaccccaagtctttgtgatgtatcaagagccacggtatccagggtaatgtcagcataccaccaagaaggacgaaccacatccaacaggattaactgtggacgcaagaggaagctgtctgaaagggatgttcgggtgctaacccggattgtatccaaaaaacataaaaccacagctgcccaaatcacggcagaattcaatgtgcacctcaactctcctgtttccaccagaactgtcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156356 True 1199 lncRNA 0.46 3 35202917 35204176

Neighbor

gene id symbol gene type direction distance location
cav3 cav3,LOC107749619,LOC107584510,LOC107750282 coding upstream 379208 34815978 ~ 34823709 (+)
LOC103023460 NA coding upstream 398636 34798245 ~ 34804281 (+)
LOC103034490 LOC108436251,LOC107658083,LOC107750281,LOC107584511,LOC107749617,LOC107567083,LOC107673479 coding upstream 423152 34777298 ~ 34779765 (+)
parp3 parp3,LOC107749614,LOC107673445 coding upstream 429982 34761583 ~ 34772935 (+)
LOC103035135 grm2,grm2a,LOC107657935,LOC107673619,LOC107567094 coding upstream 447614 34689863 ~ 34755303 (+)
hemk1 NA coding downstream 49920 35254096 ~ 35269371 (+)
LOC103022280 LOC103022280,LOC108436247,LOC108271634 coding downstream 258624 35462800 ~ 35471205 (+)
LOC103021651 slc6a13,LOC108413697,LOC107567077,LOC107721195,LOC107584422,LOC108271735 coding downstream 298880 35503056 ~ 35523915 (+)
LOC103046487 NA coding downstream 378247 35582423 ~ 35594235 (+)
trub2 trub2 coding downstream 412148 35616324 ~ 35620073 (+)
G115619 NA non-coding upstream 467990 34688232 ~ 34734927 (+)
G115614 NA non-coding upstream 516537 34672853 ~ 34686380 (+)
trnaf-gaa_1 NA non-coding upstream 775377 34427468 ~ 34427540 (+)
G115557 NA non-coding upstream 992043 34210118 ~ 34210874 (+)
G115512 NA non-coding upstream 1086091 34116398 ~ 34116826 (+)
G115757 NA non-coding downstream 33444 35237620 ~ 35238160 (+)
G115764 NA non-coding downstream 76433 35280609 ~ 35280927 (+)
G115765 NA non-coding downstream 84467 35288643 ~ 35289248 (+)
G115774 NA non-coding downstream 117786 35321962 ~ 35349945 (+)
G115777 NA non-coding downstream 120247 35324423 ~ 35325420 (+)
LOC111193767 NA other upstream 72844 35057150 ~ 35130073 (+)
G115736 NA other upstream 193975 34920701 ~ 35008942 (+)
LOC103038162 NA other upstream 810958 34380297 ~ 34391959 (+)
rbm38 rbm38,LOC103039930,LOC108436278 other upstream 862173 34330998 ~ 34340744 (+)
G115510 grm7,LOC108271537,LOC107668159,LOC107708172,LOC107569297,LOC108427575 other upstream 1106052 34095917 ~ 34096865 (+)
LOC103023619 cadps,LOC106953609 other downstream 86652 35290828 ~ 35363640 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other downstream 349425 35553601 ~ 35559726 (+)
G115917 NA other downstream 438698 35642874 ~ 35676035 (+)
G115931 NA other downstream 526203 35730379 ~ 35734359 (+)
tomm6 NA other downstream 754367 35958543 ~ 35967878 (+)

Expression


Co-expression Network