G115757


Basic Information

Item Value
gene id G115757
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35237620 ~ 35238160 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU156358
ctgctgctgctgctacacaCTGGGGGCTCCTCCTAGTCCTCCTTGCCATgcatgcagacagacagactgactgaagaAAAGCGAGCAGCTCCTCCGTTCATAAAAAGGTGAGTCTGCAGTGTGGACGGTAGCGCCTCGTGTGCGCACCCATGCCGTTTAAAGTGTCGCAGTGGGCACGGCTGCAGAGTCCCGAGCGCATTTCAGAGCCCCGGTGCGCGTGAATCAGCCCCGCCGCTCTACAGCGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156358 True 245 lncRNA 0.60 2 35237620 35238160

Neighbor

gene id symbol gene type direction distance location
cav3 cav3,LOC107749619,LOC107584510,LOC107750282 coding upstream 413911 34815978 ~ 34823709 (+)
LOC103023460 NA coding upstream 433339 34798245 ~ 34804281 (+)
LOC103034490 LOC108436251,LOC107658083,LOC107750281,LOC107584511,LOC107749617,LOC107567083,LOC107673479 coding upstream 457855 34777298 ~ 34779765 (+)
parp3 parp3,LOC107749614,LOC107673445 coding upstream 464685 34761583 ~ 34772935 (+)
LOC103035135 grm2,grm2a,LOC107657935,LOC107673619,LOC107567094 coding upstream 482317 34689863 ~ 34755303 (+)
hemk1 NA coding downstream 15936 35254096 ~ 35269371 (+)
LOC103022280 LOC103022280,LOC108436247,LOC108271634 coding downstream 224640 35462800 ~ 35471205 (+)
LOC103021651 slc6a13,LOC108413697,LOC107567077,LOC107721195,LOC107584422,LOC108271735 coding downstream 264896 35503056 ~ 35523915 (+)
LOC103046487 NA coding downstream 344263 35582423 ~ 35594235 (+)
trub2 trub2 coding downstream 378164 35616324 ~ 35620073 (+)
G115755 NA non-coding upstream 33444 35202917 ~ 35204176 (+)
G115619 NA non-coding upstream 502693 34688232 ~ 34734927 (+)
G115614 NA non-coding upstream 551240 34672853 ~ 34686380 (+)
trnaf-gaa_1 NA non-coding upstream 810080 34427468 ~ 34427540 (+)
G115557 NA non-coding upstream 1026746 34210118 ~ 34210874 (+)
G115764 NA non-coding downstream 42449 35280609 ~ 35280927 (+)
G115765 NA non-coding downstream 50483 35288643 ~ 35289248 (+)
G115774 NA non-coding downstream 83802 35321962 ~ 35349945 (+)
G115777 NA non-coding downstream 86263 35324423 ~ 35325420 (+)
G115778 LOC108436257 non-coding downstream 88071 35326231 ~ 35333587 (+)
LOC111193767 NA other upstream 107547 35057150 ~ 35130073 (+)
G115736 NA other upstream 228678 34920701 ~ 35008942 (+)
LOC103038162 NA other upstream 845661 34380297 ~ 34391959 (+)
rbm38 rbm38,LOC103039930,LOC108436278 other upstream 896876 34330998 ~ 34340744 (+)
G115510 grm7,LOC108271537,LOC107668159,LOC107708172,LOC107569297,LOC108427575 other upstream 1140755 34095917 ~ 34096865 (+)
LOC103023619 cadps,LOC106953609 other downstream 52668 35290828 ~ 35363640 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other downstream 315441 35553601 ~ 35559726 (+)
G115917 NA other downstream 404714 35642874 ~ 35676035 (+)
G115931 NA other downstream 492219 35730379 ~ 35734359 (+)
tomm6 NA other downstream 720383 35958543 ~ 35967878 (+)

Expression


Co-expression Network