G115765


Basic Information

Item Value
gene id G115765
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35288643 ~ 35289248 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU156366
ctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtactataacaggctctgtgtgtgtgtgtgtgtactataacaggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgtgtgtgtgaggagcagcATAACAGCGGGAGTAAGTATTCTTATTGACAGGAGTCAtctataactgtaaataaaaagaaaatatacaagTCAGCTTTGGTAGAAAAGTGCTAACAGTAGGGAACAGTCAGTTTTCCACTTTGTTAGTGCAGTGCTGGTACAGGGTCGTCTGCCGTATTTGAGCCAGTACACACCTGTGTTCAGAGAATCAACAGGTTAGGTGCGACAGTCGTTCACCAGCACAAAAACGACTGCTCAGTGACACTGATGTAGAACACTCAGAAAGTGACACTGGGCCAGCTGTGGGCCAGAAGTATTTTTCTGCTTGCGACTCTAAACCAGCAGTGCCGACTTAGA
>TU156368
ctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtactataacaggctctgtgtgtgtgtgtgtgtactataacaggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgtgtgtgtgaggagcagcATAACAGCGGGAGTAAGTATTCTTATTGACAGGAGTCAtctataactgtaaataaaaagaaaatatacaagTCAGCTTTGGTAGAAAAGTGCTAACAGTAGGGAACAGTCAGTTTTCCACTTTGTTAGTGCAGTGCTGGTACAGGGTCGTCTGCCGTATTTGAGCCAGTACACACCTGTGTTCAGAGAATCAACAGGTTAGGTGCGACAGTCGTTCACCAGCACAAAAACGACTGCTCAGTGACACTGATGTAGAACACTCAGAAAGTGACACTGGGCCAGCTGTGGGCCAGAAGTATTTTTCTGCTTGCGACTCTAAACCAGCAGTGCCGACTTAGA
>TU156372
ctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtactataacaggctctgtgtgtgtgtgtgtgtactataacaggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgcgtgcatgcgtgcgtgcgtgtgtgtgtgaggagcagcATAACAGCGGGAGTAAGTATTCTTATTGACAGGAGTCAtctataactgtaaataaaaagaaaatatacaagTCAGCTTTGGTAGAAAAGTGCTAACAGTAGGGAACAGTCAGTTTTCCACTTTGTTAGTGCAGTGCTGGTACAGGGTCGTCTGCCGTATTTGAGCCAGTACACACCTGTGTTCAGAGAATCAACAGGTTAGGTGCGACAGTCGTTCACCAGCACAAAAACGACTGCTCAGTGACACTGATGTAGAACACTCAGAAAGTGACACTGGGCCAGCTGTGGGCCAGAAGTATTTTTCTGCTTGCGACTCTAAACCAGCAGTGCCGACTTAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156366 False 480 lncRNA 0.46 2 35288643 35289248
TU156368 False 478 lncRNA 0.46 2 35288643 35289248
TU156372 True 488 lncRNA 0.47 2 35288643 35289248

Neighbor

gene id symbol gene type direction distance location
hemk1 NA coding upstream 19272 35254096 ~ 35269371 (+)
cav3 cav3,LOC107749619,LOC107584510,LOC107750282 coding upstream 464934 34815978 ~ 34823709 (+)
LOC103023460 NA coding upstream 484362 34798245 ~ 34804281 (+)
LOC103034490 LOC108436251,LOC107658083,LOC107750281,LOC107584511,LOC107749617,LOC107567083,LOC107673479 coding upstream 508878 34777298 ~ 34779765 (+)
parp3 parp3,LOC107749614,LOC107673445 coding upstream 515708 34761583 ~ 34772935 (+)
LOC103022280 LOC103022280,LOC108436247,LOC108271634 coding downstream 173552 35462800 ~ 35471205 (+)
LOC103021651 slc6a13,LOC108413697,LOC107567077,LOC107721195,LOC107584422,LOC108271735 coding downstream 213808 35503056 ~ 35523915 (+)
LOC103046487 NA coding downstream 293175 35582423 ~ 35594235 (+)
trub2 trub2 coding downstream 327076 35616324 ~ 35620073 (+)
hdhd3 hdhd3 coding downstream 332404 35621652 ~ 35625208 (+)
G115764 NA non-coding upstream 7716 35280609 ~ 35280927 (+)
G115757 NA non-coding upstream 50483 35237620 ~ 35238160 (+)
G115755 NA non-coding upstream 84467 35202917 ~ 35204176 (+)
G115619 NA non-coding upstream 553716 34688232 ~ 34734927 (+)
G115614 NA non-coding upstream 602263 34672853 ~ 34686380 (+)
G115774 NA non-coding downstream 32714 35321962 ~ 35349945 (+)
G115777 NA non-coding downstream 35175 35324423 ~ 35325420 (+)
G115778 LOC108436257 non-coding downstream 36983 35326231 ~ 35333587 (+)
G115848 NA non-coding downstream 142527 35431775 ~ 35432139 (+)
G115861 LOC108436256,LOC107750275 non-coding downstream 190947 35480195 ~ 35483755 (+)
LOC111193767 NA other upstream 158570 35057150 ~ 35130073 (+)
G115736 NA other upstream 279701 34920701 ~ 35008942 (+)
LOC103038162 NA other upstream 896684 34380297 ~ 34391959 (+)
rbm38 rbm38,LOC103039930,LOC108436278 other upstream 947899 34330998 ~ 34340744 (+)
G115510 grm7,LOC108271537,LOC107668159,LOC107708172,LOC107569297,LOC108427575 other upstream 1191778 34095917 ~ 34096865 (+)
LOC103023619 cadps,LOC106953609 other downstream 1580 35290828 ~ 35363640 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other downstream 264353 35553601 ~ 35559726 (+)
G115917 NA other downstream 353626 35642874 ~ 35676035 (+)
G115931 NA other downstream 441131 35730379 ~ 35734359 (+)
tomm6 NA other downstream 669295 35958543 ~ 35967878 (+)

Expression


Co-expression Network