LOC103023619 (cadps,LOC106953609)


Basic Information

Item Value
gene id LOC103023619
gene name cadps,LOC106953609
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35290828 ~ 35363640 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU156377
agtaataaataaatattttatttggaattctcTGATTATTAGTAACAGCTATTCACACAAAAGGATGTTTGACACAAGACACTGAGTGCGTCTGAAGTCAGCAGGAGAATGGCTGGAGCATGTGCACACATGAATAGGCCTGTACTGCTAGTGTATGGCAAAGCAAATCAGGCAGTGTGCAGTCAGCCATGTAGCACATATTAAAAACAGCCCGTAATCTTACTCATGCACTCTTAATGCACTGCTGAATTCAGAAGCCCATCTGCCAACAGGAGCGCAACATGTTCAGTGCTGCTGTGTCCACTCTATAACCAATTGGTCAGCTCACAAATGATCTAATGATATTGTGATTTGTTCACTTGGCTGTTATATGGGtgtagtttgtgtgtatgtatgcattatcaagagagagagagagagaaatgtaatGTTTGTACGAGAGAGTATTTCTATGTCTTCACTTTAAacaaattttctctttttttatagaaaacatCAAGAAAATATCACAAAACACATCAAAACCCTTGGCTGTTCACCAGCGATTTGACACCAACTGTAGGTGTCACCCATCCTCAATTATTTGTGACCGTATGTGTGGGTGTTTGATTGTCAACTTCAGTATCTCCCCCTCAGAATAAATGACAGTATGTGGACAGACAGTTCACAGAGACACAATGAATTCCTgagttttctcttttcctcattGATGTGTGCACAAAAGTCTGccacaaaaaaagacatttcaATACAAGATCAACACAAGCCAAAGAAGTACAAATCAAAAAAATCACAATCACAAagaataacaacaacaacaggaaACCACATTGCAGCCTGTTCCAGCCTGTTCCTCACAAGCTGACAGGCTCTTCTGCTTCAGCAAACAGCTCCAGATTCACAGAGACAACAATCTGCGTCGGTTCTCTCTCTAGCTATTCTCTCcgttttctcctcctcctttaaTGAGCCGTTTGTTTCCTCTCTTGCCTGCAGGGCCGCGGGGTTTGGCAAAGGCTTGCTTGTGAGCTTGCTGCTTAGGATGAACCTCATCATACAGCTCTTGTTCAGCAGCTGTGAGAGGAGCAGGGCCGGAGCTGGAGGACACATGCCGCAGtttatacatagatgcattacacactgGAGACTGGTCAGGTGACCACGAAATGAAGAGCCACTCATAGCCCTGTGCATTCTGGGAGTCGAGGCGATAGAGAATGTAGCAGGGCTCCTGAGGGTCCAGCAGAGGAAGCAGGAAGTTGTCATAATCTTTCTCCCAGGACTGAGACGGTTCTCGctgtaGTTCACTCACCGTTCCGGATCAGCACCTGGATGAGGCGGCCTGTCCCACTCCTCGCCTTTACCAGGAACTGTCTCAGCTCATCCGTCACCACCAGTACCAGAAACATGGCGGGTCAGCGTGTCTACCCGCCCAGGAGCGCTCAGTCTGGGGGTAAAAAGCTGAAGCCTGAAGTAGAGGCAGACGAGGGTCACCTGGAGGATCTTCACTTCTGCACTAGTGACTTCCTAAAGCAAAGGAATAGAAAAGCCTATCTGTTTTCCAACTActtaagaaaaatatcagaatgtCAGAAGATTATCTAAAGGAGGAAATGTGCACTCTTGGAGACACATACATGTTCACAGTGGACGTGAGTGCATTCTCGCCAGAACAAGTCATTGTTACCTCATCACAAAACATCATTCAGGTTTCTGCTGAAAAGCTGGCATCAGATGGTACCGTCATAGACACATTTTTCCACAAATGGCAGTTTCCTCCAGATGCAGACCCCATGTCAGTGAGCTCATCCTTGGGGCAGGGTGGTGCACTTACAGTTACAGCTTTTAAACACAAGACAAAAGTTAAGTGATCCATACACCTTTATGATGGCCTTGACTGAAGACTGAAGAAAGGCACTTCAAATTATtccaataaataatataaacattttgagatgctttattttaaatgcaacaACAATCAGTACATTAAAAAAGTGTGGTGACCAATGTTTGAACTACTTTAAGACAACTTTCTTATTGCTGTtgatgtaaaaatagactgtgcACATTGATGTATTAAAGATTCCCATAATCGATGGCAGAATGGGTTATGAAAGACTATATTGGTAACTATTGgtaagtGTTtcttaaatgattaaatgaaattgtacttttttaaggGATACTGATATCTGAACTTCTGGTGGTACAGTAGAACTCTGGCTTTAGAGTCCCTTGTGAAGTCAGATGCTCACTGTGCGAAGTAAGTGCAAACAGTAAGGCACATATTGTGTTGAATGTCATTGTGTATGCGTGCCCGTGTCTCCATATGACTCTGAGTGACATTGCTGTCAGTGCTTCCCCAGGGGCTGCAAACTTGTCGTGAATCAAGGTTAACACAAAGCACAAACCACTGACTGACATAATTATATCAGTTAGTTTGACATATATAGGTCATATATAGTTCAGTTAAAAAAAGCTTGCTCTGACTTTCACACAGTAAAGGTTGAAATAATAAACTGTGATAGTCTATGGGTGTGTAAGTAGGGGAGTGTATGCTTTGCCAACATGTTAACTTACAGAACTGAGAGATGGGCGCATCCATCTGCGCTGCAGCTCCACCCTTGGAGTTAAGTTTCTGGACCTGGGTAGGCGGTACCGGTTTGTGTGATTGGCCGGTGGCTCGGTACATGGCCTGCACCCATAGAATGCGGTCCTGCTCATCATCGCTGGCGAAGATCACAGTGTCGCCTTCCTTCACGGCATTAAAAAATGCACGACCTCCATCCAGACCT
>XM_022675718.1
AAAGCTGAAGCCTGAAGTAGAGGCAGACGAGGGTCACCTGGAGGATCTTCACTTCTGCACTAGTGACTTCCTAAAGCAAAGGAATAGAAAAGCCTATCTGTTTTCCAACTActtaagaaaaatatcagaatgtCAGAAGATTATCTAAAGGAGGAAATGTGCACTCTTGGAGACACATACATGTTCACAGTGGACGTGAGTGCATTCTCGCCAGAACAAGTCATTGTTACCTCATCACAAAACATCATTCAGGTTTCTGCTGAAAAGCTGGCATCAGATGGTACCGTCATAGACACATTTTTCCACAAATGGCAGTTTCCTCCAGATGCAGACCCCATGTCAGTGAGCTCATCCTTGGGGCAGGGTGGTGCACTTACAGTTACAGCTTTTAAACACAAGACAAAAGGtaagaaaacatatttttgtcaatttaaattttaatgcaTGGATTTCTACCcttgcagaatattttttttctttctcta
>XM_022675719.1
AAAGCTGAAGCCTGAAGTAGAGGCAGACGAGGGTCACCTGGAGGATCTTCACTTCTGCACTAGTGACTTCCTAAAGCAAAGGAATAGAAAAGCCTATCTGTTTTCCAACTActtaagaaaaatatcagaatgtCAGAAGATTATCTAAAGGAGGAAATGTGCACTCTTGGAGACACATACATGTTCACAGTGGACGTGAGTGCATTCTCGCCAGAACAAGTCATTGTTACCTCATCACAAAACATCATTCAGGTTTCTGCTGAAAAGCTGGCATCAGATGGTACCGTCATAGACACATTTTTCCACAAATGGCAGTTTCCTCCAGATGCAGACCCCATGTCAGTGAGCTCATCCTTGGGGCAGGGTGGTGCACTTACAGTTACAGCTTTTAAACACAAGACAAAAGTTAAGTGATCCATACACCTTTATGATGGCCTTGACTGAAGACTGAAGAAAGGCACTTCAAATTATtccaataaataatataaacattttgagatgctttattttaaatgcaacaACAATCAGTACATTAAAAAAGTGTGGTGACCAATGTTTGAACTACTTTAAGACAACTTTCTTATTGCTGTtgatgtaaaaatagactgtgcACATTGATGTATTAAAGATTCCCATAATCGATGGCAGAATGGGTTATGAAAGACTATATTGGTAACTATTGgtaagtgtaaatgtaaaatccAAATATGTAAATCTTTTGAAATAATagtttttgtgatgtcacaaagacagtcacaaaaaatacatatagtaTCTGTCAAAagtttctcattcaatgttttattttttcccctacattgtaaatacatactgaagtcatccagactattatggatcacataaggaatcatgtattaacttaaaagtgttaaacaaagcctTTAGGTGGGATTCTGTTAacttctgaggctggtaactctgatgaacttatcctgtgcaacagaggtaactcttggtttTCATTTCctagggcagtcctgatgagagcctcttttatcataacatttttgatttgtttaacttttttgtttactaaatagttACATATGTTCATCTTCATTGTTTGGATgacttaagtattaatctacaatgcagaaaaaaaaaatggaaaaaaacgccactgaatttaaggtttgACTGTTATTGTATATTcacctttatatttatatagttatatttaactgaaataagtTTTACTCCACCCATAAGCAcagtaacaaaaatattgttGAAAAATGTACAAGAAATGTATACAATCATTTTTGTTTGGTAGAATATATGTCTTTTACCCCTAATTTA

Function

symbol description
cadps Predicted to enable phosphatidylinositol-4,5-bisphosphate binding activity and protein kinase binding activity. Predicted to be involved in positive regulation of exocytosis and presynaptic dense core vesicle exocytosis. Predicted to act upstream of or within catecholamine secretion; synaptic vesicle priming; and vesicle organization. Predicted to be located in dense core granule. Predicted to be active in glutamatergic synapse and presynapse. Predicted to be extrinsic component of neuronal dense core vesicle membrane.

NR:

description
PREDICTED: calcium-dependent secretion activator 1 isoform X11

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156377 True 2798 lncRNA 0.43 9 35290828 35363640
XM_022675718.1 False 485 mRNA 0.40 4 35309647 35320134
XM_022675719.1 False 1320 mRNA 0.34 5 35309647 35321059

Neighbor

gene id symbol gene type direction distance location
hemk1 NA coding upstream 21457 35254096 ~ 35269371 (+)
cav3 cav3,LOC107749619,LOC107584510,LOC107750282 coding upstream 467119 34815978 ~ 34823709 (+)
LOC103023460 NA coding upstream 486547 34798245 ~ 34804281 (+)
LOC103034490 LOC108436251,LOC107658083,LOC107750281,LOC107584511,LOC107749617,LOC107567083,LOC107673479 coding upstream 511063 34777298 ~ 34779765 (+)
parp3 parp3,LOC107749614,LOC107673445 coding upstream 517893 34761583 ~ 34772935 (+)
LOC103022280 LOC103022280,LOC108436247,LOC108271634 coding downstream 99160 35462800 ~ 35471205 (+)
LOC103021651 slc6a13,LOC108413697,LOC107567077,LOC107721195,LOC107584422,LOC108271735 coding downstream 139416 35503056 ~ 35523915 (+)
LOC103046487 NA coding downstream 218783 35582423 ~ 35594235 (+)
trub2 trub2 coding downstream 252684 35616324 ~ 35620073 (+)
hdhd3 hdhd3 coding downstream 258012 35621652 ~ 35625208 (+)
G115765 NA non-coding upstream 1580 35288643 ~ 35289248 (+)
G115764 NA non-coding upstream 9901 35280609 ~ 35280927 (+)
G115757 NA non-coding upstream 52668 35237620 ~ 35238160 (+)
G115755 NA non-coding upstream 86652 35202917 ~ 35204176 (+)
G115619 NA non-coding upstream 555901 34688232 ~ 34734927 (+)
G115848 NA non-coding downstream 68135 35431775 ~ 35432139 (+)
G115861 LOC108436256,LOC107750275 non-coding downstream 116555 35480195 ~ 35483755 (+)
LOC111193769 NA non-coding downstream 160694 35524334 ~ 35525089 (+)
G115873 NA non-coding downstream 161769 35525409 ~ 35526510 (+)
G115874 fkbp5,LOC108271732,LOC108413698,LOC105026479 non-coding downstream 165852 35529492 ~ 35532021 (+)
LOC111193767 NA other upstream 160755 35057150 ~ 35130073 (+)
G115736 NA other upstream 281886 34920701 ~ 35008942 (+)
LOC103038162 NA other upstream 898869 34380297 ~ 34391959 (+)
rbm38 rbm38,LOC103039930,LOC108436278 other upstream 950084 34330998 ~ 34340744 (+)
G115510 grm7,LOC108271537,LOC107668159,LOC107708172,LOC107569297,LOC108427575 other upstream 1193963 34095917 ~ 34096865 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other downstream 189961 35553601 ~ 35559726 (+)
G115917 NA other downstream 279234 35642874 ~ 35676035 (+)
G115931 NA other downstream 366739 35730379 ~ 35734359 (+)
tomm6 NA other downstream 594903 35958543 ~ 35967878 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other downstream 618479 35982119 ~ 35988060 (+)

Expression


Co-expression Network