G115861 (LOC108436256,LOC107750275)


Basic Information

Item Value
gene id G115861
gene name LOC108436256,LOC107750275
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35480195 ~ 35483755 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU156500
ACAGTAGTTATGTGAGGCATATTATGCCCAAACTGGGAACTTCATCTATTACAAATGagcccatatatatatatatgtgacaATCTCTTCTCTCAGAAATATCATCAGTGTAAAACATACTAATATATAACAAATGTAGACATGCAGCAATGAAACACACAATTCATGCAAGAACATACAATACAATCATACAGCATTTAAAACGGACTGCATTTGCACAGACCCTGATGAAGATTAAACATTGTAATATACcgaaaaatatatctatatggatcacttataaatataagtattGGTATGAATATACCAGATATCAGCACTGGTATTATCTGTAATGATATGCAACATCTTAACTTCTCTTTTCACACAACTGATATATACCATATAATATACCATATTTCTGTAGCAGAGAATagctaataaacattgtaaGTAAACAGAACGTAAAGATGGTAAATTAAAGTAAGACTGTATAGCTGTAGATGAAGTAGACATGTGGCAATGAAGATAAGAATGACGAcaaagatgaagatgatgatgagaacgatgatcttgtttttgtaaGGGGCTGCCGTGTAAGAGTGAGAAtgctgaagagagagagtgtgtgtgtatggggggaATATTTATGTTGAACGGAGTGGCTCATACATCTACTGGAGTCTGTCTGTCCACAGTGCGTAAGGTCTGAAGATCCGTGAAAGTCTCAAATGTGTGAGAGGACAGTTCCTTTTTTGGAGATTTTGGACTAGGCAAGTCCTCAGCCGGGGAACACAGGGTTCTCATTCTCTGCCGCATAGACCCGGGGGTTTTGCAGACTGCATACATCATCCACAAAGGAACCAGCAGGGTAGAAGAGAGGGTGAAGAAGCCTCCAATGGCATAGCCCCACCAAGGGTACTCATACGTGTTATTGAACTTCAGAGGAGTGTACTTAACCAAGGAGAAGACAAATGTCCCTGTGCAAATAATAGGGGTCACAAATTTCCAGCAGTACTTCATATGAGGCCAGGGCCGATAGCCAATCATGTCTTCAATGTTGTTATACAGACGGTCTGCACCTGAAATTACAAATACCAGTTAAAAGCATGAATGTGAATCGTGTTGGAGATTTTTGGTTTAGTAATGCTAAATCTACGTAATCTTGTAAACGCTATGGAACTAAACATATTTatctaaacatatttatatatgtatatatttaagccAACATATcaaatacaatataacaaatGTCTCTACCATAAACCCATCCAACGCAAATGGATTGAAGAATGGCAAAAGCCAGGAGAGTCATTCCACTGCAAGCATAATAGTCAAACAAC

Function

NR:

description
cAMP-dependent protein kinase inhibitor beta

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156500 True 1325 lncRNA 0.38 3 35480195 35483755

Neighbor

gene id symbol gene type direction distance location
LOC103022280 LOC103022280,LOC108436247,LOC108271634 coding upstream 8990 35462800 ~ 35471205 (+)
hemk1 NA coding upstream 210824 35254096 ~ 35269371 (+)
cav3 cav3,LOC107749619,LOC107584510,LOC107750282 coding upstream 656486 34815978 ~ 34823709 (+)
LOC103023460 NA coding upstream 675914 34798245 ~ 34804281 (+)
LOC103034490 LOC108436251,LOC107658083,LOC107750281,LOC107584511,LOC107749617,LOC107567083,LOC107673479 coding upstream 700430 34777298 ~ 34779765 (+)
LOC103021651 slc6a13,LOC108413697,LOC107567077,LOC107721195,LOC107584422,LOC108271735 coding downstream 19301 35503056 ~ 35523915 (+)
LOC103046487 NA coding downstream 98668 35582423 ~ 35594235 (+)
trub2 trub2 coding downstream 132569 35616324 ~ 35620073 (+)
hdhd3 hdhd3 coding downstream 137897 35621652 ~ 35625208 (+)
LOC103043339 LOC108440316,LOC108271728 coding downstream 165082 35648837 ~ 35661125 (+)
G115848 NA non-coding upstream 48056 35431775 ~ 35432139 (+)
G115774 NA non-coding upstream 130250 35321962 ~ 35349945 (+)
G115778 LOC108436257 non-coding upstream 146608 35326231 ~ 35333587 (+)
G115777 NA non-coding upstream 154775 35324423 ~ 35325420 (+)
G115765 NA non-coding upstream 190947 35288643 ~ 35289248 (+)
LOC111193769 NA non-coding downstream 40579 35524334 ~ 35525089 (+)
G115873 NA non-coding downstream 41654 35525409 ~ 35526510 (+)
G115874 fkbp5,LOC108271732,LOC108413698,LOC105026479 non-coding downstream 45737 35529492 ~ 35532021 (+)
G115876 LOC108271732 non-coding downstream 52225 35535980 ~ 35549547 (+)
G115925 patz1 non-coding downstream 177688 35661443 ~ 35664877 (+)
LOC103023619 cadps,LOC106953609 other upstream 116555 35290828 ~ 35363640 (+)
LOC111193767 NA other upstream 350122 35057150 ~ 35130073 (+)
G115736 NA other upstream 471253 34920701 ~ 35008942 (+)
LOC103038162 NA other upstream 1088236 34380297 ~ 34391959 (+)
rbm38 rbm38,LOC103039930,LOC108436278 other upstream 1139451 34330998 ~ 34340744 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other downstream 69846 35553601 ~ 35559726 (+)
G115917 NA other downstream 159119 35642874 ~ 35676035 (+)
G115931 NA other downstream 246624 35730379 ~ 35734359 (+)
tomm6 NA other downstream 474788 35958543 ~ 35967878 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other downstream 498364 35982119 ~ 35988060 (+)

Expression


Co-expression Network