G115873


Basic Information

Item Value
gene id G115873
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35525409 ~ 35526510 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU156516
GCACGTTTGTGGTGTGTATGGAGGTGAATCCAGGCTAGAAATAGGCTCAAAGTTCTTCAGAAGGAGATGTTCTGTTCTATTAGAAGAATATCTTATTTTGTAGTTTTCGAATGGCAGTGTTCCATCTGCAGATTGTTCAGACTGATTGTGAGATTCAGGACTATTAcagatagatttttttattagaagaATAAATGTGGTGCAAAAAGTTTTTATCTGCAGAcgataaaaacaaaccaaacactcAGGGTACCACAGCAATAACActgtaaatgtttatgtatttttacataaaaaaaagcttgGTACCTCATTTGCCCAAATGTTTACTTTCTGACtccacttaaaatatattgatgTAAAGGCTTTTCGCTCAGTTATCTTGGTtgcatgttttacagtgtgtttagcaacacctgagcaactaAGCTGAAAACATCATAGCAACTTTCTTTTGGGGAATGCGCTATTTTAGTTGTGGCTGTTGTTCATCAATGTGTGTGAAAACATTTTTGTAACATAGATCAGTTTTTCAAATGTCATTTTGAGCctttataatgtaataatataaaaccaGTCAATTTTGACTGACAATACATAATATGTTGTGCTGTTACTTACAGTGAGGCCAAtccatttatttctgctgtagattgaaaacatctgggtttgacattaatagatgaatatgagacaaataattaacatttcaggtttttatttccagttctttatatctaaatattatacagttttaaagATAGCACCTTTTGTCTGAAACCCCATTTTTCCTGcgagcaaaagtattgaaacagacAAACTTAAAATAGAGTAAAGTGAATAAGACTTATATTTAGTTGCAAATTCTTGCAACAGCTGCATCAAGCCTGTGACCAACTGACATCACTAAACTTTTGCAGTAATCAtttgtgatgcttttccagACTTTTACTACAGCCTCTTTCAGTGGCTACTCCCTCCAGTCTTCCCATTAGAAGGTAAATTGCCAGCTCTATATGGTTTACGGAAGGTCTAAAGCCTTCCATCTCTGCTGAGTCCTATCTCTCATGTGGCACTATAAAAGGCATCACAGATGAGGTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156516 True 1102 lncRNA 0.35 1 35525409 35526510

Neighbor

gene id symbol gene type direction distance location
LOC103021651 slc6a13,LOC108413697,LOC107567077,LOC107721195,LOC107584422,LOC108271735 coding upstream 1494 35503056 ~ 35523915 (+)
LOC103022280 LOC103022280,LOC108436247,LOC108271634 coding upstream 54204 35462800 ~ 35471205 (+)
hemk1 NA coding upstream 256038 35254096 ~ 35269371 (+)
cav3 cav3,LOC107749619,LOC107584510,LOC107750282 coding upstream 701700 34815978 ~ 34823709 (+)
LOC103023460 NA coding upstream 721128 34798245 ~ 34804281 (+)
LOC103046487 NA coding downstream 55913 35582423 ~ 35594235 (+)
trub2 trub2 coding downstream 89814 35616324 ~ 35620073 (+)
hdhd3 hdhd3 coding downstream 95142 35621652 ~ 35625208 (+)
LOC103043339 LOC108440316,LOC108271728 coding downstream 122327 35648837 ~ 35661125 (+)
sfi1 NA coding downstream 161116 35687626 ~ 35709189 (+)
LOC111193769 NA non-coding upstream 320 35524334 ~ 35525089 (+)
G115861 LOC108436256,LOC107750275 non-coding upstream 41654 35480195 ~ 35483755 (+)
G115848 NA non-coding upstream 93270 35431775 ~ 35432139 (+)
G115774 NA non-coding upstream 175464 35321962 ~ 35349945 (+)
G115874 fkbp5,LOC108271732,LOC108413698,LOC105026479 non-coding downstream 2982 35529492 ~ 35532021 (+)
G115876 LOC108271732 non-coding downstream 9470 35535980 ~ 35549547 (+)
G115925 patz1 non-coding downstream 134933 35661443 ~ 35664877 (+)
G115915 eif4enif1 non-coding downstream 149668 35676178 ~ 35676841 (+)
G116020 NA non-coding downstream 335704 35862214 ~ 35862823 (+)
LOC103023619 cadps,LOC106953609 other upstream 161769 35290828 ~ 35363640 (+)
LOC111193767 NA other upstream 395336 35057150 ~ 35130073 (+)
G115736 NA other upstream 516467 34920701 ~ 35008942 (+)
LOC103038162 NA other upstream 1133450 34380297 ~ 34391959 (+)
rbm38 rbm38,LOC103039930,LOC108436278 other upstream 1184665 34330998 ~ 34340744 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other downstream 27091 35553601 ~ 35559726 (+)
G115917 NA other downstream 116364 35642874 ~ 35676035 (+)
G115931 NA other downstream 203869 35730379 ~ 35734359 (+)
tomm6 NA other downstream 432033 35958543 ~ 35967878 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other downstream 455609 35982119 ~ 35988060 (+)

Expression


Co-expression Network