G115925 (patz1)


Basic Information

Item Value
gene id G115925
gene name patz1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35661443 ~ 35664877 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU156600
aaaaacaaacaccaatAGAAAAGTATGCCTATATCCAAATGTCcaaaaatcaatgaaactcTAGACATAAATTGCAAAGAAACTATTTCTTTGTCAGAGAACAAAGATAGAATCccaaacatacatacaaatgTACATTTTGTTCTATGTGCATGTCTTTATACAAAAGTGTCACTTTCTCTGTGTACACTGTTCTTAAGACGGTCCTTATAATGACAGATTTTCGCAGTTCACAATCAGTACTGGGAAGGCACTTTGCAACATAcgaatatacaaaaatgtaagcagaaTTTGCGTGCACGCACAAAacgcataaaaaaaacagacatacaCAGTGACTgaggaaagaaaaacacttcCAGTGACACAATGTCCCACCCAAAATATGAGGcaacaaataattataataaaccaTTAAGCATTGAATTGTCCCCAAGGCCCACTTTCATTCAGCAAATAAAATGAGGAAAGCACTCAATTCAGCCTGCTAGAACTGGAGTCAAGAGACGGTGACTGAACATGAATTAATGATGATCTCTACACTGTcagattaattttattaatttcagaaACAATCTGCtcgaaaaaaaaagtcaagcagAATAGTCAAAGCAACTTAGAAAAATGCTGTCATGAAAAAAGTCTCTTCTCTGTACCTTATATAAAGGTATACTAACCAGAAGGTAAATGCAAAGCAAATTTGACTGTATACCTTCTCAGATTACATATCAACTGTCCAAACCTATGTAGAAACTAAAACCCATACAATGTAATATCTGAAATGAGACATTATTAAtgtaattcattttattaattacttaTCATTATTTCTTAAAACACCTGGTAGCAGACTGTGCTGCCAGGTATCATATGCCCACAGTAGCAGCATACTGTAGcagtatactatactatACAGTATACTCCAGTACCTGGAGGATATATTAAATGTGTTGCCATCTGATCTGAAACTAAGGAATACTGACACAATTACTGAaactcacacacaaaaacagttttttgatTATGATAACACACCCCAGCACctgcacaaataaaaaaagaaaaaacaaatgtagGGATTTACCGGTACCAACTTAATATAACTTAGGCTCTTTGCTCAAAGTCGAACACCCATTCCTCCAAGAAGGCCAAGGAAAGCTTATATACAAGGACCCCATTCACATAGATTAAACAAACGAACAATATTGGccatagatatatatatacacattttttacgTGTGTGAACATTATACACATGTCATGATAGGAACTCTTAAGTTAAGCAGGAATGTATAGAAACATcatagaaaaaaatctgatatattaaaaaaaagcccTCTGATTATATTACATTCTGAAGATAAAGAGACCAggtgcacacacaaacacacaaaacaatcaagctgtctctctctcactcacaaacacacctcacatacacaaaaaaaaaaaaaaaaaaaaaacacacatacatacagaagCTCTTTTGCGGGCCTCTTGTCAGACATACAGCTCAAAGAAATACCAGCACAGCACAAATCTAAATCTGAACAACTTTATATAAACCATTTCATAAAGAAGACTGGGACACTAATATCAAtaagttaataaaatatactCTTCATTTCTTGCAATATCTTACAGTCATACCTGAAATTGGTCCCTGCTGAATATTCAAAACTCACATGCACTGTCATGTAACCCAAAACAATCCTTCTGGCAAGTATCCATgatgcaaaataaaattaaaataaaagtagcaATAGCAGGTGTGGATTAAATTTAAGTGATTAATGATGATTAAACTTAATGACTTTAGACAGGCAGGgttattgagatttttttaacCCAATAATCGTCTTAAGTCTAATGATCAGCCTCAGCAGCTGAAAGGTTGTCAAGCTAAAAAATCAAGAATTCAATTGTGTTAACATTAGTCTAACAGCCCAAACCACCAGTGGCTCGACTTAATCTCTGGAACAAACTATGACACAGGAAATGGAGAAGGTAGTTAGCTGAAATCGCGCCAACGAGAAAACAGAATGGAATACATATTGGCAAACATGTACGTTCAAACTGACAAAAACAAGTCGACGGTATGAAACACAAAAGACAAAGTAGTCTACGATGACACTGATGAAAAGTAGAAAAGCAGTAACTCAAACTTGTGGCAGTCCAGAAAGTACAAACATATCTCTTTCACAAGAGAGTCACTTGTCTCCTAAACCCATAACACTGCTCCCAACCTCAGAGTCCACTAGTGAAGAGGCGAAAGCTGATTGGACGATCTGAAACCCAAACGACTCCAGTAGCGACATGTTCTGTTGGGGCGAAAAGGGCGAGCCCAGATCCCCAAGGCTGGACCCCGTCCCACTGTGTTTCTTATGCACCCGCTGGTGGTGCTTGTTGAGGTAAGACTTTGTGCGGAAGGTCTGGCCACATTCGCCACAGGCAAACTTCTTTTCTGGGTCCGTTTTTTGCTTGGAGCTGCAGGGTGTCGCCGCTGGGCCATCAGCCTCCCCATTGAAGATCAGAGAAGTCACCTCTAGCTCCTCACCTTCTGCTTTATGCTCGTGCTTCAGCTCTGTCCCGTTCGAGAGTTCCCCAAACGCAGCGTCTGAACCATCAGAATCCTGATGGTGgcatttcccagcattctccT

Function

symbol description
patz1 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleoplasm. Orthologous to human PATZ1 (POZ/BTB and AT hook containing zinc finger 1).

NR:

description
PREDICTED: POZ-, AT hook-, and zinc finger-containing protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156600 True 2664 lncRNA 0.38 2 35661443 35664877

Neighbor

gene id symbol gene type direction distance location
LOC103043339 LOC108440316,LOC108271728 coding upstream 318 35648837 ~ 35661125 (+)
hdhd3 hdhd3 coding upstream 36235 35621652 ~ 35625208 (+)
trub2 trub2 coding upstream 41370 35616324 ~ 35620073 (+)
LOC103046487 NA coding upstream 67208 35582423 ~ 35594235 (+)
LOC103021651 slc6a13,LOC108413697,LOC107567077,LOC107721195,LOC107584422,LOC108271735 coding upstream 137528 35503056 ~ 35523915 (+)
sfi1 NA coding downstream 22749 35687626 ~ 35709189 (+)
LOC103040678 zgc:172271,LOC108440373,LOC107721198,LOC107568196,LOC107667401 coding downstream 44403 35709280 ~ 35717863 (+)
sirt4 sirt4 coding downstream 53091 35717968 ~ 35721428 (+)
rft1 rft1,LOC107584424,LOC107721169,LOC107568194,LOC107673548,LOC107712099 coding downstream 58842 35723719 ~ 35729532 (+)
eefsec eefsec,LOC107667374,LOC107584423,LOC107568193 coding downstream 75680 35740557 ~ 35746300 (+)
G115876 LOC108271732 non-coding upstream 111896 35535980 ~ 35549547 (+)
G115874 fkbp5,LOC108271732,LOC108413698,LOC105026479 non-coding upstream 129422 35529492 ~ 35532021 (+)
G115873 NA non-coding upstream 134933 35525409 ~ 35526510 (+)
LOC111193769 NA non-coding upstream 136354 35524334 ~ 35525089 (+)
G115861 LOC108436256,LOC107750275 non-coding upstream 177688 35480195 ~ 35483755 (+)
G115915 eif4enif1 non-coding downstream 11301 35676178 ~ 35676841 (+)
G116020 NA non-coding downstream 197337 35862214 ~ 35862823 (+)
LOC111193772 NA non-coding downstream 230070 35894947 ~ 35899393 (+)
G116050 NA non-coding downstream 266047 35930924 ~ 35933206 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding downstream 325156 35990033 ~ 36000056 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other upstream 101717 35553601 ~ 35559726 (+)
LOC103023619 cadps,LOC106953609 other upstream 297803 35290828 ~ 35363640 (+)
LOC111193767 NA other upstream 531370 35057150 ~ 35130073 (+)
G115736 NA other upstream 652501 34920701 ~ 35008942 (+)
LOC103038162 NA other upstream 1269484 34380297 ~ 34391959 (+)
G115931 NA other downstream 65502 35730379 ~ 35734359 (+)
tomm6 NA other downstream 293666 35958543 ~ 35967878 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other downstream 317242 35982119 ~ 35988060 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other downstream 678108 36342985 ~ 36359777 (+)
LOC103044253 LOC108440873 other downstream 992515 36657392 ~ 36713884 (+)

Expression


Co-expression Network