G115931


Basic Information

Item Value
gene id G115931
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35730379 ~ 35734359 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU156625
aaagcAGTCCAGAAGCACTACCTCACATGCTCACATCAGATCACTCGAGTTTGTCATTGTTGGACTAAAGGAACCAGCTGGAACAAGGAGACTTCACCCTGTCATTATCACATCCATCACCGTGAGAatagagggaaaagagagaggaaaggaggaggagtaaAAGAGTGACTCATGCCCTGGCAAACTAAATGATGGTCCCCTAaggtttgtgtatgtgtggacCAGCCTTAGAAAGGAAGGGTGTGTGTGCATAAACAGCTCTACCAGAGGAAAAGAGAACTCCAACTACCAGCTGCAGTGAAAGTTTTGGAATAATCTGACACCCAGAGTATCGTGAACAGAGAGCATGTCAAAGCCacaggaggaggatgaggaggggaGGATGAAGAGGCCAGAGGTGAAAGATGAAGACCTGATCCAGGCGAGGGATAAACTGGCTTTTGGGACAGAAGTGAAGAGTAAGACgatggaggtgatggaggaaTGTGAGCGAGCTGGAAAAGTTGCTCCATCTGTTTCAGTAATGTTCGTTCTGGAGCAGAGACTGCCTTCAACAAACCCTGCAAGAaaaagtagaagaaaaaaaacagaacctaCAGGATTCACTTGCTGTATTCCGTGTGCTAAAATGGATTGAGAAAATGTTCAATAAACATGTATGAAAGTCAAGAACGA
>TU156626
TGTCAATGTCACATATCTCATTGGGTTACTTTGGGTTAAATTTCCCACTGAAATGAGCAATTCTTCAATGGCATCTTgatttgtatgtgtgtacagtTCACCATTTCCATAGCATGAGACAATCAGCGAGTACAGGCTGCACACTGTCCTAAAAACaagacaaattaaaaacatgtgggGCATTaaaaaacgcacacacacactcctctctctctctctctctctctctctctttcacacacacacacacacccacccacacacacaacttcagaaagcAGTCCAGAAGCACTACCTCACATGCTCACATCAGATCACTCGAGTTTGTCATTGTTGGACTAAAGGAACCAGCTGGAACAAGGAGACTTCACCCTGTCATTATCACATCCATCACCGTGAGAatagagggaaaagagagaggaaaggaggaggagtaaAAGAGTGACTCATGCCCTGGCAAACTAAATGATGGTCCCCTAaggtttgtgtatgtgtggacCAGCCTTAGAAAGGAAGGGTGTGTGTGCATAAACAGCTCTACCAGAGGAAAAGAGAACTCCAACTACCAGCTGCAGTGAAAGTTTTGGAATAATCTGACACCCAGAGTATCGTGAACAGAGAGCATGTCAAAGCCacaggaggaggatgaggaggggaGGATGAAGAGGCCAGAGGTGAAAGATGAAGACCTGATCCAGGCGAGGGATAAACTGGCTTTTGGGACAGAAGTGAAGAGTAAGACgatggaggtgatggaggaaTGTGAGCGAGCTGGAAAAGTTGCTCCATCTGTTTCAGTAATGTTCGTTCTGGAGCAGAGACTGCCTTCAACAAACCCTGCAAGAaaaagtagaagaaaaaaaacagaacctaCAGGATTCACTTGCTGTATTCCGTGTGCTAAAATGGATTGAGAAAATGTTCAATAAACATGTATGAAAGTCAAGAACGA
>TU156628
aaagcAGTCCAGAAGCACTACCTCACATGCTCACATCAGATCACTCGAGTTTGTCATTGTTGGACTAAAGGAACCAGCTGGAACAAGGAGACTTCACCCTGTCATTATCACATCCATCACCGTGAGAatagagggaaaagagagaggaaaggaggaggagtaaAAGAGTGACTCATGCCCTGGCAAACTAAATGATGGTCCCCTAaggtttgtgtatgtgtggacCAGCCTTAGAAAGGAAGGGTGTGTGTGCATAAACAGCTCTACCAGAGGAAAAGAGAACTCCAACTACCAGCTGCAGTGAAAGTTTTGGAATAATCTGACACCCAGAGTATCGTGAACAGAGAGCATGTCAAAGCCacaggaggaggatgaggaggggaGGATGAAGAGGCCAGAGGTGAAAGATGAAGACCTGATCCAGGCGAGGGATAAACTGGCTTTTGGGACAGAAGTGAAGAGTAAGACgatggaggtgatggaggaaTGTGAGCGAGCTGGAAAAGTTGCTCCATCTGTTTCAGTAATGTTCGTTCTGGAGCAGAGACTGCCTTCAACAAACCCTGCAAGAaaaagtagaagaaaaaaaacagaacctaCAGGATTCACTTGCTGTATTCCGTGTGCTAAAATGGATTGAGAAAATGTTCAATAAACATGTATGAAAGTCAAGAACGAGTCACACAGGAAAGAGCCTAATGTTGATTATCATGATTGTCATTATCAGCTTAAGCTAAAAAAATGTGGTTGTCGTAGAGTTGCAAATgatgttttattgtccatgtcttgGCTTAAAgatacatgtttaaaaataataataattttcttaatatttaacCACAACAGGatggacagcttaagctttaccttTATATTAAGACaatattagaaatattaaattagtattattagGTTTTTTGGTCCCTTGAAAATAAAACGGTACTAAGATTGTGGTGTCTCTGACATCAAAGGTTAATTTCTTAAAGGCATAGGGTTATCCACAGATGTCAGGCTGGGAATTCTAGGAGTTTAAATCAAgtttatataatatgatatttttgtggtatcagtaattaaaatgtctaaattattttaaaaaatgtttttcaactTAAGAAACTTATAATTACTGAACCCCTTAAAAGAATCACTTATCTTACCCccacataaaaataacattagcaAATGTtcaaaaagtactttaaagtaAAGGTTACGATATTTCCTCTATATTAGTGATATTGACCTTACACACCATCGGGTtttgttaattttgtatttattaatttattctaaGGGTGTggatgttatttatatatttgtattttgtattaaacATGCCTTGATTGAcctctatttttatacaagaaAAATTAAAGTTCAAATCTTTTACAGATCTTGCCATGCATCTAACAAAATAAACCTCAATAATCACAACCACTATCAAGTGGCACAAAT

Function

GO:

id name namespace
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006518 peptide metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156625 False 678 TUCP 0.45 3 35730653 35733579
TU156626 False 952 TUCP 0.44 3 35730379 35733579
TU156628 True 1458 TUCP 0.36 3 35730653 35734359

Neighbor

gene id symbol gene type direction distance location
rft1 rft1,LOC107584424,LOC107721169,LOC107568194,LOC107673548,LOC107712099 coding upstream 847 35723719 ~ 35729532 (+)
sirt4 sirt4 coding upstream 8951 35717968 ~ 35721428 (+)
LOC103040678 zgc:172271,LOC108440373,LOC107721198,LOC107568196,LOC107667401 coding upstream 12516 35709280 ~ 35717863 (+)
sfi1 NA coding upstream 21190 35687626 ~ 35709189 (+)
LOC103043339 LOC108440316,LOC108271728 coding upstream 69254 35648837 ~ 35661125 (+)
eefsec eefsec,LOC107667374,LOC107584423,LOC107568193 coding downstream 6198 35740557 ~ 35746300 (+)
rab7a rab7a,rab7,LOC102230535,LOC108254780,LOC106518505,LOC106582926 coding downstream 50683 35785042 ~ 35789366 (+)
LOC103038587 LOC103038587 coding downstream 59060 35793419 ~ 35794515 (+)
LOC103038900 arpc4,LOC103358720,LOC107568180,LOC100696600,LOC103386159 coding downstream 61920 35796279 ~ 35801173 (+)
LOC103037527 myhb,LOC108440470,LOC108271865,LOC107721187,LOC108254796,LOC107568178,LOC107667337 coding downstream 70735 35805094 ~ 35818582 (+)
G115915 eif4enif1 non-coding upstream 53538 35676178 ~ 35676841 (+)
G115925 patz1 non-coding upstream 65502 35661443 ~ 35664877 (+)
G115876 LOC108271732 non-coding upstream 180832 35535980 ~ 35549547 (+)
G115874 fkbp5,LOC108271732,LOC108413698,LOC105026479 non-coding upstream 198358 35529492 ~ 35532021 (+)
G115873 NA non-coding upstream 203869 35525409 ~ 35526510 (+)
G116020 NA non-coding downstream 127855 35862214 ~ 35862823 (+)
LOC111193772 NA non-coding downstream 160588 35894947 ~ 35899393 (+)
G116050 NA non-coding downstream 196565 35930924 ~ 35933206 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding downstream 255674 35990033 ~ 36000056 (+)
G116138 NA non-coding downstream 455415 36189774 ~ 36223578 (+)
G115917 NA other upstream 54344 35642874 ~ 35676035 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other upstream 170653 35553601 ~ 35559726 (+)
LOC103023619 cadps,LOC106953609 other upstream 366739 35290828 ~ 35363640 (+)
LOC111193767 NA other upstream 600306 35057150 ~ 35130073 (+)
G115736 NA other upstream 721437 34920701 ~ 35008942 (+)
tomm6 NA other downstream 224184 35958543 ~ 35967878 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other downstream 247760 35982119 ~ 35988060 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other downstream 608626 36342985 ~ 36359777 (+)
LOC103044253 LOC108440873 other downstream 923033 36657392 ~ 36713884 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 1365655 37100014 ~ 37121327 (+)

Expression


Co-expression Network