LOC111193772


Basic Information

Item Value
gene id LOC111193772
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35894947 ~ 35899393 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU156763
CATGGAGCCTGAGGATTGGCCACAGCGCAAAAATGATACCTGGGCAGGGCTCCAAGGCGTACCTGAAAACCCAGATCTTTTTGTAGAGGCAGTTTCTTCGCTTCAGGAGCTTAAGGAGATTGTGTTTCTAGTAGTGCTTGAGATTCCACCTCTATTGTTCTACTCTTTTCTTTCCCCACACAACTTCAGCGGCTCTACTCAAACTGGTTTGTGAACTTTCGGCCAACATGGAAGGAGCAGTCGGTACTTCAGCAAATGGAAGGAGCAGGAAGTGAACGTCTTTGGCTGAAGCAGCACAGCAAGTCGACACAATGGCATCTCTTGTTCGCAGCTACATACTGAATGACTACGATGAGAATCAACCCGTTTCACCACAAAGTGTGATTCCTCTCAGCGATCTTCACTGCCCTGTCTGTCTCTATAAAATCCTCTGATTTGCGTCTTACCAGGCATGTTTAGATGTTGCTATTGTCTCTAATACTGCCTGGTAATGCCGCCAATCACAAGGAAGTTGATCATCATTCTCACCTCCTTGCTACAATGTTGGAATGTTGGTTTTAAACTCCTGCCTTGCTCATTCTTACTTACAGACTTatgccattttttttgtttacacgCAAAAACAATACTCGTTTTTTGCCATtgttaatgatgatgatgataaatgatGTGCATCTGAATGTAATGACAAATTTTACTGTCAGTGTTTACAATAAAATCGTATTTTTCTGTCCAAATTTCTGATTTTGTATTATTCATCTTATTGTTTCCATTTCATTCATGCATCCTACTTGCTCTATAATATATTGTGAATTAAGTACTCATGACTTATGCTTGAAGCTGTGACTTGTTTACTTTTccttaaatgtaaaacatttaattaccataaaaaaacacacaaaaaaagaaatcttagcaagtgaaattatctCATTTTAAGGCAATCTATTTTCTTTCCCTAATAAGATTTTTGGCCTTACTAAGCATttaagtgtaagattattttgcttattttgaaaaaaagtttatttgcttaatataagcatata
>XR_002650716.1
CTGGGCAGGGCTCCAAGGCGTACCTGAAAACCCAGATCTTTTTGTAGAGGCAGTTTCTTCGCTTCAGGAGCTTAAGGAGATTGTGTTTCTAGTAGTGCTTGAGATTCCACCTCTATTGTTCTACTCTTTTCTTTCCCCACACAACTTCAGCGGCTCTACTCAAACTGGTTTGTGAACTTTCGGCCAACATGGAAGGAGCAGTCGGTACTTCAGCAAATGGAAGGAGCAGGAAGTGAACGTCTTTGGCTGAAGCAGCACAGCAAGTCGACACAATGGCATCTCTTGTTCGCAGCTACATACTGAATGACTACGATGAGAATCAACCCGTTTCACCACAAAGTGTGATTCCTCTCAGCGATCTTCACTGCCCTGTCTGTCTCTATAAAATCCTCTGATTTGCGTCTTACCAGGCATGTTTAGATGTTGCTATTGTCTCTAATACTGCCTGGTAATGCCGCCAATCACAAGGAAGTTGATCATCATTCTCACCTCCTTGCTACAATGTTGGAATGTTGGTTTTAAACTCCTGCCTTGCTCATTCTTACTTACAGACTTatgccattttttttgtttacacgCAAAAACAATACTCGTTTTTTGCCATtgttaatgatgatgatgataaatgatGTGCATCTGAATGTAATGACAAATTTTACTGTCAGTGTTTACAATAAAATCGTATTTTTCTGTCCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156763 True 1049 lncRNA 0.37 2 35894947 35899393
XR_002650716.1 False 698 lncRNA 0.42 2 35894986 35899081

Neighbor

gene id symbol gene type direction distance location
LOC103033861 NA coding upstream 25515 35864138 ~ 35869432 (+)
LOC103035259 LOC103035259 coding upstream 33516 35858681 ~ 35861431 (+)
c13h1orf159 cunh1orf159,LOC103036790 coding upstream 40856 35849749 ~ 35854091 (+)
kbtbd12 kbtbd12,LOC107712091,LOC107721181,LOC107673613,LOC107584421 coding upstream 50414 35839437 ~ 35844533 (+)
p4htm p4htm,LOC108440486,LOC107721183,LOC107673589,LOC107667396,LOC107584428,LOC107712096 coding upstream 66066 35820481 ~ 35828881 (+)
ppil1 ppil1,LOC107667353 coding downstream 1830 35901223 ~ 35906018 (+)
tspo tspo,LOC107721166,LOC107568174,LOC107667354,LOC107584504 coding downstream 52648 35952041 ~ 35955542 (+)
crbn crbn,LOC107711034,LOC107748399 coding downstream 139799 36039192 ~ 36046913 (+)
LOC103026553 vhl coding downstream 148504 36047897 ~ 36050402 (+)
tatdn2 NA coding downstream 151117 36050510 ~ 36056356 (+)
G116020 NA non-coding upstream 32124 35862214 ~ 35862823 (+)
G115915 eif4enif1 non-coding upstream 218106 35676178 ~ 35676841 (+)
G115925 patz1 non-coding upstream 230070 35661443 ~ 35664877 (+)
G115876 LOC108271732 non-coding upstream 345400 35535980 ~ 35549547 (+)
G115874 fkbp5,LOC108271732,LOC108413698,LOC105026479 non-coding upstream 362926 35529492 ~ 35532021 (+)
G116050 NA non-coding downstream 31531 35930924 ~ 35933206 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding downstream 90640 35990033 ~ 36000056 (+)
G116138 NA non-coding downstream 290381 36189774 ~ 36223578 (+)
G116155 NA non-coding downstream 406957 36306350 ~ 36306762 (+)
G116255 NA non-coding downstream 517415 36416808 ~ 36462597 (+)
G115931 NA other upstream 160588 35730379 ~ 35734359 (+)
G115917 NA other upstream 218912 35642874 ~ 35676035 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other upstream 335221 35553601 ~ 35559726 (+)
LOC103023619 cadps,LOC106953609 other upstream 531307 35290828 ~ 35363640 (+)
LOC111193767 NA other upstream 764874 35057150 ~ 35130073 (+)
tomm6 NA other downstream 59150 35958543 ~ 35967878 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other downstream 82726 35982119 ~ 35988060 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other downstream 443592 36342985 ~ 36359777 (+)
LOC103044253 LOC108440873 other downstream 757999 36657392 ~ 36713884 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 1200621 37100014 ~ 37121327 (+)

Expression


Co-expression Network