G116103 (prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968)


Basic Information

Item Value
gene id G116103
gene name prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35982119 ~ 35988060 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU156853
TGCaagtaataaaaatagcatATATGCACACAATACACATACAGATCACATACATGAAGACAAAATAGCCTAtaccaaatatatacacacacactatacaccatacacatatacagtataagacCCACACAGTACATTTTACTCTTACTTTAAGGTTAATCACATGTGCAAACATGCCTGATCAATATACATcttaaaatgcatgttttttatttgctctCTAAAATCACATGGGCCAAGGATTCTCaaaacactttctctctctcagatgtacacacacatacacacaaacacacactgtatgcACATATATGCATAAAGCTAAATTTACCATATCAAACTCACAATGCAATGTTATACATCATAAACCCAGAaagtgcagcatgcatatactgATCTAAACTGTATCTGTACATAATCTCTATGCTTTTGTCTCGTTTGCTTTCCACATTCAGTGTTTAAACAACCTCTAAGGCTTTATCAGTTTTGTGCATTGACTTAATCATTGAGGAATTCTGTAATAATGCTAAATTACAGTAATGAATGTGCTACTGCTAAATACATTAACTAACTGACTGAATGAAATGAACAGAATGAATCATATCTACATGGACTTTATAAGGGTCATTCATTGAACATTGATTAGTTCACTCTAAAATAAGCTGCACTCTATCACCACAGTCACTAAAGGAATTTTAGGACTTTGTCTTTTTCAGTCAAAACCTTCATCAGGTGTTAACTGAAAGTTCTGTAGCATCTGGAATATCACCATCACTCTGGGGTTCAGTGTAAATATCCATGCCCCAAAAACTAGTTTGAGAAGAAGGAGCTGTTTCGTGACACAGAAAAATACTGGGTAGATTATTTGATCATATAATACTACTGGACCCTCTCCTCTCAAGCTAAGTGGTGGAGGcaattgtttaacacttttgcaGAAGGTGGTCCATTCTCGGATTGATGAACGAGAAGCCGGCGAAGGCTGTCTGGTCCATTGAGTCGATCAGGCCTTTCTCGCAGTGAGAGAGACGAGGCTTCTCACTTAAAAACTCCCGGTCAAAGTTACTACAGTCATTTGGCGCTTTCACTTTTGGTTTAAATGGGGGCTCAATTTCTCTCCTCTCCAAAGCAGACCAGTTAACAGTCTTGAAAAATGTCTGATGTCGGATATTACCCACAACACCCAAACGGCGGGATGGATCTCTCTCAAAAAGcCGCTCCAGCATTTCTCTGGTATCCACAGTGATCCAGCGTGGGTAGTGAGGTGTGTCCATACGGATCGACTCAAATagttcatcttcatcatcaccatgaAATGGTGACTGACCAATCAGCATTTCATAGACCAGCACACCAAATGACCACCAGTCGACTGAGAATGAATACTGCTGACCCAGGAGAATCTCAGGAGCGATGTAGTCTGGGGTTCCACAGAAAGTGGTCGCCAGATTTTCTCCAAACACATTCTCCTTACACATGCCAAAATCAGCTATCTTTATATGACCATCTCCATCCAGCATCACATTATCCAACTTCAGATCCCTGTAAATAATGCCTTTTCCATGGAGGAACTGCAGTCCACAAACGATTTCTGCTCCATAGAATGTAGCTCTGTAGAGGTCAAAGCGTCCTTTTTCTTGTATGTGGAACATCAGATCTCCTCCATTCAGGTACTCCATCACAAAGAACAAGTGCTCCTTGGTCTGGAAGGTGGAGTAAAGGTGTGTGAGAAATGGATTATCCCAGGCCAGTGCGAGCACACGCTTCTCCACCATGGTACACTCTACATCATCATCCATCAACACCACGTCTTTCTTCAAAGCTTTTACTGCAAACCACTCCCCGCTGCTCTTCATCTCAGCCAGAAACACCTTTCCAAAGCTGCCTTTGCCCAGGACCTTATGGAAGGTAAAATGTTCAGCAGTAATGCGTGTCTGGTGTGTGATGGACACAGGACGAGGACTGGAACCCTCCCAGAGAAGACCGTATGGAGTCCCATCAGTGACATCTGGCCCTGGGCTTTTGTTAAAGTCCTGGTAAACTCCAGTATCCTTGGTTTGTGGGTCAGCATTAGGATCAGGCCTCTTTGTGGACTTctggctgACTTGAGTAAGTGCCTCTGCCAGAAGTTTTTGGTTAATCCCACACAAGTTGGCCACTTTAGTCTGGCACTTATGATGAACATTCATAGCACAGTCCTCACACTTCAGACCCTGTTTGACAAGACCCCACAGCAGACTGCCACAGTGGTCACAGAAGGTGGGGCTCATGTAGTTGTAGGTCTTAAAGCGATGTGGCATATCGATTTTAAAGCGCTCCTTCTGAAACACAGTGTCACGACTGTTAGCCGCAGTGCCAGTGCATCTGCCAATGATTTTGTCAATGCACTTCTTATGTATGGCTGCATTACACTGTCTGCACTTGTATCCTTGTTTATTAAGCCCC
>TU156856
TGCaagtaataaaaatagcatATATGCACACAATACACATACAGATCACATACATGAAGACAAAATAGCCTAtaccaaatatatacacacacactatacaccatacacatatacagtataagacCCACACAGTACATTTTACTCTTACTTTAAGGTTAATCACATGTGCAAACATGCCTGATCAATATACATcttaaaatgcatgttttttatttgctctCTAAAATCACATGGGCCAAGGATTCTCaaaacactttctctctctcagatgtacacacacatacacacaaacacacactgtatgcACATATATGCATAAAGCTAAATTTACCATATCAAACTCACAATGCAATGTTATACATCATAAACCCAGAaagtgcagcatgcatatactgATCTAAACTGTATCTGTACATAATCTCTATGCTTTTGTCTCGTTTGCTTTCCACATTCAGTGTTTAAACAACCTCTAAGGCTTTATCAGTTTTGTGCATTGACTTAATCATTGAGGAATTCTGTAATAATGCTAAATTACAGTAATGAATGTGCTACTGCTAAATACATTAACTAACTGACTGAATGAAATGAACAGAATGAATCATATCTACATGGACTTTATAAGGGTCATTCATTGAACATTGATTAGTTCACTCTAAAATAAGCTGCACTCTATCACCACAGTCACTAAAGGAATTTTAGGACTTTGTCTTTTTCAGTCAAAACCTTCATCAGGTGTTAACTGAAAGTTCTGTAGCATCTGGAATATCACCATCACTCTGGGGTTCAGTGTAAATATCCATGCCCCAAAAACTAGTTTGAGAAGAAGGAGCTGTTTCGTGACACAGAAAAATACTGGGTAGATTATTTGATCATATAATACTACTGGACCCTCTCCTCTCAAGCTAAGTGGTGGAGGcaattgtttaacacttttgcaGAAGGTGGTCCATTCTCGGATTGATGAACGAGAAGCCGGCGAAGGCTGTCTGGTCCATTGAGTCGATCAGGCCTTTCTCGCAGTGAGAGAGACGAGGCTTCTCACTTAAAAACTCCCGGTCAAAGTTACTACAGTCATTTGGCGCTTTCACTTTTGGTTTAAATGGGGGCTCAATTTCTCTCCTCTCCAAAGCAGACCAGTTAACAGTCTTGAAAAATGTCTGATGTCGGATATTACCCACAACACCCAAACGGCGGGATGGATCTCTCTCAAAAAGCTGCAGGAAAACAAAAAGGAGAGTCTGAAAGCAAGAATGGGCTGTACTCATTAATatcttcaagctgtttttttaaaccgCAGAACTGTTTGCAGCTAGGCAAGTATGATAACAGATTCCATTGTCCACAAACATtatactaaaaatactaaatactacaAATACTAAAAGAAAAGATTAAAGATGACCACAG

Function

symbol description
prkcda Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and peptidyl-serine phosphorylation. Predicted to act upstream of or within apoptotic process and protein phosphorylation. Located in immunological synapse. Is expressed in blood; myotome; nervous system; otic vesicle; and somite. Human ortholog(s) of this gene implicated in autoimmune lymphoproliferative syndrome type 3; fatty liver disease; and hypertension. Orthologous to human PRKCD (protein kinase C delta).

NR:

description
protein kinase C delta type-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156853 True 2445 TUCP 0.42 13 35982119 35988060
TU156856 False 1407 lncRNA 0.37 2 35982119 35983689

Neighbor

gene id symbol gene type direction distance location
tspo tspo,LOC107721166,LOC107568174,LOC107667354,LOC107584504 coding upstream 26577 35952041 ~ 35955542 (+)
ppil1 ppil1,LOC107667353 coding upstream 76101 35901223 ~ 35906018 (+)
LOC103033861 NA coding upstream 112687 35864138 ~ 35869432 (+)
LOC103035259 LOC103035259 coding upstream 120688 35858681 ~ 35861431 (+)
c13h1orf159 cunh1orf159,LOC103036790 coding upstream 128028 35849749 ~ 35854091 (+)
crbn crbn,LOC107711034,LOC107748399 coding downstream 51132 36039192 ~ 36046913 (+)
LOC103026553 vhl coding downstream 59837 36047897 ~ 36050402 (+)
tatdn2 NA coding downstream 62450 36050510 ~ 36056356 (+)
ccdc174 NA coding downstream 73405 36061465 ~ 36066292 (+)
LOC103028900 LOC108439894 coding downstream 78917 36066977 ~ 36075546 (+)
G116050 NA non-coding upstream 48913 35930924 ~ 35933206 (+)
LOC111193772 NA non-coding upstream 82726 35894947 ~ 35899393 (+)
G116020 NA non-coding upstream 119296 35862214 ~ 35862823 (+)
G115915 eif4enif1 non-coding upstream 305278 35676178 ~ 35676841 (+)
G115925 patz1 non-coding upstream 317242 35661443 ~ 35664877 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding downstream 1973 35990033 ~ 36000056 (+)
G116138 NA non-coding downstream 201714 36189774 ~ 36223578 (+)
G116155 NA non-coding downstream 318290 36306350 ~ 36306762 (+)
G116255 NA non-coding downstream 428748 36416808 ~ 36462597 (+)
LOC111193778 NA non-coding downstream 513173 36501233 ~ 36503562 (+)
tomm6 NA other upstream 14241 35958543 ~ 35967878 (+)
G115931 NA other upstream 247760 35730379 ~ 35734359 (+)
G115917 NA other upstream 306084 35642874 ~ 35676035 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other upstream 422393 35553601 ~ 35559726 (+)
LOC103023619 cadps,LOC106953609 other upstream 618479 35290828 ~ 35363640 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other downstream 354925 36342985 ~ 36359777 (+)
LOC103044253 LOC108440873 other downstream 669332 36657392 ~ 36713884 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 1111954 37100014 ~ 37121327 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 1536791 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 2402217 38390277 ~ 38394530 (+)

Expression


Co-expression Network