G116138


Basic Information

Item Value
gene id G116138
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36189774 ~ 36223578 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU156904
ATGATATTTTAATGTTATAACGTGAAAACATCAATATGGTTTTACTTTGATACACGGCCAAGCCAGCGCGCTTCCATTTCACTTCACGTCGCCTCCAGCTACAGTGCTCAACAACTGTAGAATTCCACCATGCCTTAAACCAAGCTTGAAATAGAACTGAATTAAGTCATGCAGACGAGCCATGTTCCTTCACTGAACCTGGTAAGTGTTGAAGTGCTGAATGGCCTaatatcatgaaataacatgataaatgtttaacattaaataacgtgatagttgcatatctcagaataacgtgataatttcttatctcagaataacgtgatagttgcatatctcagaataacgtgaaaGTTGCATATCATGAAATAACATGATAaatgtttaacattaaataacgtgatagttgcatatctcagaataacgtgataatttcttatctcagaataacgtgatagttgcatatctcagaataacgtgataatttcttatctcagaataacgtgatagttgcatatctcagaataacgtgatagttgcatatctcagaataacgtgataatttcttatctcagaataacgtgatagttgcatatctcagaataacgtgataagTATCACGTTATAACATGGTAAATATATTAGTTATAACGTAAAACTTTTCGCGTAATTACATGATACTGAGCCAAATATATATTAGGGCTTGGCAGCTCTGAGTTTCCGtagaattcagctccgcgctgccggagagagcgcccacgcgcgcgccagagagagagagagagacagagagagcgcagctcagcgcggcgaattttgcttaccctagactatatatagtattaaaatgaaaccccttaaaatcaagagggcttcgcgacccatcttggatctttggcgacccataggttgggtcgcgacccataggttgggaaccactgctctAGAAGGTGTTATATTGCAGCATGGATTTAATCAGGTCATCACCAGTATTCTTTCAGACTGATGAACAGCAGCCCATCTGACTGATTGGCTGGACTGAGCCCAGTTTCCGTTTCCCATTTCCTAATATCATGAGTGAAACTAGCCTCACACTACTGTCAGAGAAATGCCACACTCTGTAAGCCCCGAGTGGCATCTGATGGAGCAGTTGCCTCCACCTAATGGTGCATTACATCAGTAATATTTCTGTCTCTAAAGCAAAATGTCCAAGACAGCAGGTGCCGAGCTGATCCTACCAGTATATCTCCTTCTTTACAATTATATCCACATTAACTAAATCTGATAAAGCAGTGTGTCTAAGTACATCTAATATTCAAATATCCCAAACACCGCTTTGGTATCTAGTCAGTATGGTCAGAATGTTCATGCCAGTGGTGCTTAGTATCCgctgtatactatatattacGCCAGAAGCAACGGTCAGCCTGCTTACATGTGTAGAATCATGACTGCCATTTTTTTCAGCTGCTATTTTTAGTATACAACCAGTCTCTGCTGTGTAGAGCAGCACTGTAAATAgagatttgtattttttcagcTTGGAGCATAAAGGAttgttacataaataaatgataaatggatGCATGTTTACTCTCACAAGAAATGGTGCTATTTTTTAgacatatttatataatgaGGATTGTATTTGATAAATGTTGTTTCGTATTTGGTAAATGATGATTAAACTTTTACGTTTGTTTACctgtttattaatgtgtttgttgaacagtttttctttttcaaattcAACATAAAAAATTCTCTGATCTgaccttttatttatattcagtcCTAATGTAATGGCAGCTGGTACAGCAAACATACTGTAAAAACAGGATCTAATAAACTCAAATTATGAGAAAACTCTTATCAGGCATGCGTggtaattactttaaaatatttttatatgacaGAGAGgaatttatatgtaaataaaaaaatgcattgtgcAACAAGATCAAATAGTGAACATGTATTTGCTCTGTCAGACATAATTCCTTACTTTGCGATCTGTTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156904 True 2022 lncRNA 0.37 2 36189774 36223578

Neighbor

gene id symbol gene type direction distance location
LOC103028900 LOC108439894 coding upstream 114228 36066977 ~ 36075546 (+)
ccdc174 NA coding upstream 123482 36061465 ~ 36066292 (+)
tatdn2 NA coding upstream 133418 36050510 ~ 36056356 (+)
LOC103026553 vhl coding upstream 139372 36047897 ~ 36050402 (+)
crbn crbn,LOC107711034,LOC107748399 coding upstream 142861 36039192 ~ 36046913 (+)
LOC103025322 LOC108439925,LOC100332423,LOC107748417,LOC107582687,LOC107667408,LOC107585110 coding downstream 8358 36231936 ~ 36243389 (+)
trnaf-gaa_2 NA coding downstream 25195 36248773 ~ 36248845 (+)
LOC103024783 ip6k2b,LOC103024783,LOC108440711,LOC107585112,LOC107673575,LOC107711042,LOC108272042,LOC107748392 coding downstream 63479 36287057 ~ 36291813 (+)
LOC103023094 sec61a1,LOC103023094,LOC102228108,LOC108440718,LOC107384934,LOC106518493 coding downstream 90689 36314267 ~ 36320030 (+)
uroc1 uroc1 coding downstream 98265 36321843 ~ 36330036 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding upstream 189718 35990033 ~ 36000056 (+)
G116050 NA non-coding upstream 256568 35930924 ~ 35933206 (+)
LOC111193772 NA non-coding upstream 290381 35894947 ~ 35899393 (+)
G116020 NA non-coding upstream 326951 35862214 ~ 35862823 (+)
G115915 eif4enif1 non-coding upstream 512933 35676178 ~ 35676841 (+)
G116155 NA non-coding downstream 82772 36306350 ~ 36306762 (+)
G116255 NA non-coding downstream 193230 36416808 ~ 36462597 (+)
LOC111193778 NA non-coding downstream 277655 36501233 ~ 36503562 (+)
G116349 LOC108440912,LOC108439999 non-coding downstream 508570 36732148 ~ 36742014 (+)
G116359 NA non-coding downstream 599886 36823464 ~ 36831576 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 201714 35982119 ~ 35988060 (+)
tomm6 NA other upstream 221896 35958543 ~ 35967878 (+)
G115931 NA other upstream 455415 35730379 ~ 35734359 (+)
G115917 NA other upstream 513739 35642874 ~ 35676035 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other upstream 630048 35553601 ~ 35559726 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other downstream 119407 36342985 ~ 36359777 (+)
LOC103044253 LOC108440873 other downstream 433814 36657392 ~ 36713884 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 876436 37100014 ~ 37121327 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 1301273 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 2166699 38390277 ~ 38394530 (+)

Expression


Co-expression Network