LOC103028059 (ghrl)


Basic Information

Item Value
gene id LOC103028059
gene name ghrl
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36056563 ~ 36062284 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU156955
TTAACGTTAGAGGCTGCTTCAATTGAACTGTAACGTTAACTAATTACCTAACAGTAGCTAGTGACAATTTTTTACATGTCTATGGGTTTCCATTAATTAGGACCGTCAAAATATGAAGGATAATATAGTTACAGATCAGTCAGATGATTTTAAACCAGAAACAAACTGGTTAAATATTAGCCTGATAACCTGGcttgctagctagttagctacgtTAGCCACACATATATAAATCGCTGTTTAGTCGCCCGTACGGTCTCCTGCGAACATCTATGGCAGAACTACGATATAATCTGTCATCTCCTGAAGGATTCCTCTTAAGCAGCAGCCTATTTAAAAGTGGGGCCCTGTGCAGAGTTGACTACTTCCCACCATCATCCTGTACTTTACTTCACCAGAGGCATCAAGAGTCTGCTTAGGATGCCTTGCCAAAGCCGTGCAGGTCACGTGATTTTGCTCCTCTTCGCTCTTTCCTTGTGGGCTGAATGTGTTACTTGTGGCTCCAGCTTCCTCAGCCCCACCCAGAAGCCACAGGGCCGGGGAGACCGAAAGCCACCTCGAGTGGGGCGAAGAGCTGCAGCTGAGATAGATGTTCCTTCTTTGGAGGACAACCGCCTAATGATGAGCGCACCTTTTCAGTTGGGGTTCTCTTTGAGTGAGGGGGAATATGAAGAATACGGTCCAGTGCTGCAGAGGATCCTGCTGGATGTTCTTGagTGATCAAGCTATCAAATTCTACAAGGAATTGTCCGACAACTCACCATCAAAAAATCCTACCAGCTACCATTCACTGTTAAATCGATTAATTAAAATTCTAAATTGAGCAGCTA
>XM_007254273.3
aaaggtggtCTAAAGTGTTCTTTGGTGGTAAAGGTGCTTGAATATCTGTTCATCCAGATGAGAAAACACCCTCTGTTCATTAACAATCAGATTAAATAGTGAGTGTTGTATTTCGTCATGTTTATTGGTCATGCTAGTTGACCAGCGACCTACTGGCTCTTCTAAATGATAGCTTGGTCTTGCTGCTTGATCAGCATAGTGATGCAGCTGAAAATAcatgttagctaacctagTCATCTCCTGAAGGATTCCTCTTAAGCAGCAGCCTATTTAAAAGTGGGGCCCTGTGCAGAGTTGACTACTTCCCACCATCATCCTGTACTTTACTTCACCAGAGGCATCAAGAGTCTGCTTAGGATGCCTTGCCAAAGCCGTGCAGGTCACGTGATTTTGCTCCTCTTCGCTCTTTCCTTGTGGGCTGAATGTGTTACTTGTGGCTCCAGCTTCCTCAGCCCCACCCAGAAGCCACAGGGCCGGGGAGACCGAAAGCCACCTCGAGTGGGGCGAAGAGCTGCAGCTGAGATAGATGTTCCTTCTTTGGAGGACAACCGCCTAATGATGAGCGCACCTTTTCAGTTGGGGTTCTCTTTGAGTGAGGGGGAATATGAAGAATACGGTCCAGTGCTGCAGAGGATCCTGCTGGATGTTCTTGGTGATGCACCTCCTTTAGagTGATCAAGCTATCAAATTCTACAAGGAATTGTCCGACAACTCACCATCAAAAAATCCTACCAGCTACCATTCACTGTTAAATCGATTAATTAAAATTCTAAATTGA
>XM_022675751.1
ACAGCCCACAACTACACACCATCATCCTAAAGACCAAATCCTGCTCCACTTCTGAGGAGCACTAGATCAGAAAACCTCATGAGAATATCTGCTGGGTTTATCTTATggaTCATCTCCTGAAGGATTCCTCTTAAGCAGCAGCCTATTTAAAAGTGGGGCCCTGTGCAGAGTTGACTACTTCCCACCATCATCCTGTACTTTACTTCACCAGAGGCATCAAGAGTCTGCTTAGGATGCCTTGCCAAAGCCGTGCAGGTCACGTGATTTTGCTCCTCTTCGCTCTTTCCTTGTGGGCTGAATGTGTTACTTGTGGCTCCAGCTTCCTCAGCCCCACCCAGAAGCCACAGGGCCGGGGAGACCGAAAGCCACCTCGAGTGGGGCGAAGAGCTGCAGCTGAGATAGATGTTCCTTCTTTGGAGGACAACCGCCTAATGATGAGCGCACCTTTTCAGTTGGGGTTCTCTTTGAGTGAGGGGGAATATGAAGAATACGGTCCAGTGCTGCAGAGGATCCTGCTGGATGTTCTTGGTGATGCACCTCCTTTAGagTGATCAAGCTATCAAATTCTACAAGGAATTGTCCGACAACTCACCATCAAAAAATCCTACCAGCTACCATTCACTGTTAAATCGATTAATTAAAATTCTAAATTGA
>XM_022675752.1
GCCACACATATATAAATCGCTGTTTAGTCGCCCGTACGGTCTCCTGCGAACATCTATGGCAGAACTACGATATAATCTGTCATCTCCTGAAGGATTCCTCTTAAGCAGCAGCCTATTTAAAAGTGGGGCCCTGTGCAGAGTTGACTACTTCCCACCATCATCCTGTACTTTACTTCACCAGAGGCATCAAGAGTCTGCTTAGGATGCCTTGCCAAAGCCGTGCAGGTCACGTGATTTTGCTCCTCTTCGCTCTTTCCTTGTGGGCTGAATGTGTTACTTGTGGCTCCAGCTTCCTCAGCCCCACCCAGAAGCCACAGGGCCGGGGAGACCGAAAGCCACCTCGAGTGGGGCGAAGAGCTGCAGCTGAGATAGATGTTCCTTCTTTGGAGGACAACCGCCTAATGATGAGCGCACCTTTTCAGTTGGGGTTCTCTTTGAGTGAGGGGGAATATGAAGAATACGGTCCAGTGCTGCAGAGGATCCTGCTGGATGTTCTTGGTGATGCACCTCCTTTAGagTGATCAAGCTATCAAATTCTACAAGGAATTGTCCGACAACTCACCATCAAAAAATCCTACCAGCTACCATTCACTGTTAAATCGATTAATTAAAATTCTAAATTGA
>XM_022675753.1
CTTAACTGCAGGAAAACAGCCCACAACTACACACCATCATCCTAAAGACCAAATCCTGCTCCACTTCTGAGGAGCACTAGATCAGAAAACCTCATGAGAATATCTGCTGGGTTTATCTTATggaTCATCTCCTGAAGGATTCCTCTTAAGCAGCAGCCTATTTAAAAGTGGGGCCCTGTGCAGAGTTGACTACTTCCCACCATCATCCTGTACTTTACTTCACCAGAGGCATCAAGAGTCTGCTTAGGATGCCTTGCCAAAGCCGTGCAGGTCACGTGATTTTGCTCCTCTTCGCTCTTTCCTTGTGGGCTGAATGTGTTACTTGTGGCTCCAGCTTCCTCAGCCCCACCCAGAAGCCACAGGGCCGGGGAGACCGAAAGCCACCTCGAGTGGGGCGAAGAGCTGCAGCTGAGATAGATGTTCCTTCTTTGGAGGACAACCGCCTAATGATGAGCGCACCTTTTCAGTTGGGGTTCTCTTTGAGTGAGGGGGAATATGAAGAATACGGTCCAGTGCTGCAGAGGATCCTGCTGGATGTTCTTGagTGATCAAGCTATCAAATTCTACAAGGAATTGTCCGACAACTCACCATCAAAAAATCCTACCAGCTACCATTCACTGTTAAATCGATTAATTAAAATTCTAAATTGA

Function

symbol description
ghrl Predicted to enable growth hormone-releasing hormone activity. Acts upstream of or within several processes, including chordate embryonic development; regulation of response to food; and response to food. Predicted to be located in extracellular region. Is expressed in several structures, including diencephalon; digestive system; ghrelin secreting cell; heart; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in diabetic neuropathy; esophagus adenocarcinoma; morbid obesity; obesity; and type 2 diabetes mellitus. Orthologous to human GHRL (ghrelin and obestatin prepropeptide).

NR:

description
ghrelin isoform X1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0030252 growth hormone secretion biological_process
GO:0005179 hormone activity molecular_function
GO:0016608 growth hormone-releasing hormone activity molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156955 True 830 TUCP 0.44 6 36056563 36061929
XM_007254273.3 False 778 mRNA 0.46 6 36056570 36062284
XM_022675751.1 False 654 mRNA 0.48 6 36056570 36061435
XM_022675752.1 False 624 mRNA 0.48 6 36056570 36061712
XM_022675753.1 False 651 mRNA 0.47 6 36056570 36061450

Neighbor

gene id symbol gene type direction distance location
LOC103025932 LOC103025932 coding downstream 17428 36036372 ~ 36039135 (-)
LOC103029739 NA coding downstream 26788 36013177 ~ 36029775 (-)
LOC103030273 prkcda,LOC103030273,LOC108440644,LOC107673500,LOC107712078,LOC107721176,LOC107667398,LOC107582675 coding downstream 56646 35982094 ~ 35999917 (-)
ddi2 ddi2,LOC107673502,LOC107721177,LOC107667352,LOC107712079 coding downstream 77017 35969145 ~ 35979546 (-)
LOC103031953 NA coding downstream 88773 35960653 ~ 35967790 (-)
LOC103029202 LOC108440675,LOC108271813,LOC107711038,LOC107673578,LOC107667363 coding upstream 19830 36082114 ~ 36114040 (-)
LOC103030168 itpr1a,LOC108440748 coding upstream 298468 36360752 ~ 36427709 (-)
LOC103022488 LOC108439971 coding upstream 371648 36433932 ~ 36442755 (-)
smarcc2 smarcc2,LOC107711050,LOC107667400,LOC107748388 coding upstream 397699 36459983 ~ 36480201 (-)
LOC103029840 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC106565516 coding upstream 426299 36488583 ~ 36520108 (-)
G116166 NA non-coding downstream 12367 36043366 ~ 36044196 (-)
G116097 NA non-coding downstream 108381 35947731 ~ 35948182 (-)
G116076 NA non-coding downstream 123317 35930934 ~ 35933246 (-)
G116092 ppil1,LOC107667353 non-coding downstream 150561 35901252 ~ 35906002 (-)
LOC111193771 NA non-coding downstream 157846 35892638 ~ 35898717 (-)
G116171 NA non-coding upstream 3331 36065615 ~ 36066279 (-)
LOC111193773 NA non-coding upstream 13194 36075478 ~ 36076803 (-)
LOC111193775 NA non-coding upstream 132261 36194545 ~ 36254205 (-)
G116219 uroc1 non-coding upstream 261856 36324140 ~ 36330054 (-)
G116279 LOC103024058,LOC108440764,LOC107748389,LOC107585116,LOC107673509,LOC107711047,LOC106583201 non-coding upstream 287758 36350042 ~ 36360601 (-)
LOC103031109 uqcc2,cf125,LOC108440614,LOC107580205,LOC107667355,LOC106565356 other downstream 97745 35955109 ~ 35958818 (-)
LOC103034399 LOC108440553,LOC108271943,LOC107584416,LOC107721179 other downstream 176272 35869803 ~ 35880291 (-)
G116068 myhz2,LOC108440470,LOC108443907,LOC107385141 other downstream 241241 35813621 ~ 35815322 (-)
LOC103033855 oxtr,LOC107749620 other downstream 1205411 34825836 ~ 34851152 (-)
G115681 emc3,LOC107584459,LOC107657885,LOC107667035,LOC101173295 other downstream 1534145 34520957 ~ 34522418 (-)
LOC103023810 NA other upstream 959891 37022175 ~ 37031363 (-)
G116581 eif4b,LOC108441049 other upstream 979077 37041361 ~ 37045788 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other upstream 2171190 38233474 ~ 38248624 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other upstream 2318986 38381270 ~ 38384598 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other upstream 2568353 38630637 ~ 38899446 (-)

Expression


Co-expression Network