LOC103024058 (LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201)


Basic Information

Item Value
gene id LOC103024058
gene name LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36342985 ~ 36359777 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU157016
TCTTCTCTGTCTATATacccatccacacacacatacacacacaccctctgtACCCATCCACGcgcactctttctcactctctctctctctatacccatccacactctcactcactcactctctctctctctttctgtatacCCATCCACACTGAGCGCTTGTAGCACGCTGGCACGCGCAGGGCTCCAGCAACAGCATGAGAGGCTGCACGCGCCACCGGGACAGGGCAGGTAAGCAGGACCCTCGGTGACACGGTCAGTCAGCGGTCAGCAGGGCAGGACACACTAGCTACCCGCGGCTGTGGGGCTCAAACATGGTCACGGAGGTTCATATACACTCGCCATGTTCGAGCATCAGAGAGTGGACGGAGTGTAAACAGCTCgcggagctgctgctgctacagctTTAGATTAAAACATTAACAGTGTAACTGGAGTGTAGGAGGAGCAGAGAGACAGAACTGGGGATATGGTGAAATTTAGTGTCGTGTAGTAAAAAAAGTACACTTTCCATTCATTAAGCTGTCCGCGCCTGTCTGAGGGCTGTGTTTGCAGTAAAGTAGCTCGTTATAGCAGCAGTTTGTGGAGGTCATGTTGGACTGCATGCAGTTGAATGGAagtctgctgctaactgtaGAGCTCCGAGTTGATTCCGGTTACGCAATTTCAGAATGTACTAAAATGAGTCCATAGTGTGAAACAAACTTCATTGACTGGACTGACAGCGTGTTTTGAGGCTGGGGGCGTCTGTTCGGCAGGTGAACGGATGTGAAGGGGGGGTGTGATGATAAACAAGacgtgtgtggtgtgtgtgttgaatgtaaagAATACTCTAATAAGCCCCACATTTTAAAACGTGTGTCCAAAATTATGTTTATATCATATGaatgtttttaaagcatttatccTCC
>XM_007254258.3
GACATAAGTTGCACCACAACCAGCCGCCCGCCAGTGTCTCGTGCCTTCACGCTCATTAGCTACAAGCCAGCTGTACGGGATCTGTAGAAACGGGATGTTAGCGCTACCGGGAGGATGAACTCCACTGAAGACGTAACGCTGGCAGTCATGCCCCGCGAGCTCACCCAGAACCCGCTGCGGAAGATCTGGATGCCGTGTAAGAACGGTCTTCCGGATAAGCACATTTCTCAGAGGAGAGTATGCATGACCAACTGTCCTACCCTCATTGTGACTGTGGGATTGCCGGCCAGGGGAAAAACCTACATTTCTAAGAAACTCACTCGCTACCTCAACTGGATTGGTGTACCGACTAAAGagtttaatgtTGGGCAGTATCGGAGGGAGTGCGTGAAAATATACAAGAACTTCGAGTTCTTCCGCCCTGACAATGAAGAGGGGCTAAAGATCAGGAAgCAGTGTGCTCTGACTGCGCTGAACGATGTCAGACAGTACCTCAGTGTGGAAGGAGGACAAGTGGCTGTATTTGATGCCACTAACACTACAAGAGAGAGGAGGGGGATGATTATGAGGTTTGCAGAGCAAAATGGCTACAAGGTGTTTTTTGTGGAGTCTGTTTGTGAAGACCCTGAAGTTATTGCCCAGAACATTGTACAGGTGAAGTTGGGCAGTCCAGACTACATTGACTGCAACACTGAAGAGGCTGTTCAGGACTTCATGAAGAGGATCAAATGTTATGAAAACTCTTATCAGCCACTGGATGAGATTTTAGACAGGGAGCTGTCCTACATTAAAGTGATGGATGTGGGTCGACGATATTTAGTAAATCGTGTGCAGGATCACATTCAGAGCCGGATTGTGTATTACCTGATGAACATCCACATCACTCCACGCTCCATCTACCTCTGTCGACACGGAGAGAGCGATCTTAACATCAGAGGACGCATTGGTGGGGATTCAGGCCTGTCAACCCGAGGGAAAGAGtttgCACATTGTCTAGGAAAATTCATTCAGGATCAGAATATAAAAGATCTGAAAGTTTGGACCAGTCAGATGAAACGAACCATCCAAACAGCCGAGGCTCTGGGTGTTCAGTATGAACAGTGGAAAGCTCTCAATGAAATTGATGCTGGAGTATGTGAAGAGATGAGGTATGAAGAGATCCAGGAACATTACCCACTGGAGTTTGCTCTGCGTGACCAGGACAAGTATCGCTACCGTTACCCTAAAGGAGAGTCGTATGAGGACCTGGTACAGCGTCTGGAGCCGGTGATCATGGAGTTGGAAAGGCAGGAGAATGTTCTGGTCATCTGCCACCAGGCTGTGATGCGCTGCCTTCTCGCTTACTTCTTGGACAAAAGCGCAGATGAGTTGCCTTATCTGAAATGTCCCCTACACACCGTGCTGAAGCTGACCCCAGTGGCTTATGGATGTAAAGTACAGTCCATCTATCTCAATGTGGAGGCAGTGAACACCCACAGGGACAAACCCGAGAATGTCAATATTTCCCGTCTGTCGGAGGAAGCTCTTTTCACAGTCCCGGCCCACCAGTAACCCACATATCTCAGACACCGCACACAGCCGTCAGACACCAGACCCTCTTCACCTGATCAGCACTCCTGCTTCATTAGTCTTATTTTGtagatcttttttgttgttgttgatccTGAAGCATACAGAATATGCatgatttgattattttttcttattagtGTTAAAAGTGATGACTGGAATCCAGTTCTTTGAGTATAAACCCTAGTTTTGCGGggtgagtgtgtttacatgagTGTCATTTTGCAAACTTAATGCCAGTGCAGAATGGATGTGAAGATCATTTTTGGGGACAaaagttttctattttttttcccaatatattttgtttccaagattttttttcttaagtattgttgtttttgttttgttttttctttgactGATTTCATACATTCCTTGAAGAAATATTGTACGTCCCTCTTGggaagacttttgtactatttctaTTTGTTAATAGCACTTTCTtacctttttgtttctttccttttcttgtctttttttggtAATGGTGATGTTGGTGGCGATGTTGGGGGTATAGTGAAATACACTGTGCAACACAAACCAAAGTCTATTGAAGACTTCTATAAGCTCAGTAAGTTTTATTCATTCCTCTATTCagtctaaattaatatttaaatcccaaagagcaaaaaaaaaaaaaaaaaattaaaaataagcaGTTGAGGCTAAATGTGCTGATTTCACGTTTTAGCAAGCCACCGTAAAAGTGTATTGGTCAGATTTTGACCGGTGGCTGGTATTTAAAGTAATGCTAATTTGGTTAAAGGGTTTGCTGGTATGTGGCGCTAGTGTTGCTAATAGTAATTGTTTCCTGGAAGTTGTGtatctttttatgttttctttgaaATCTCATTAGAACAGTATGTAAAAATGATTTTCAATGTTTAACCAACTTTATTAATGTCTTACTGAACCTTCAACTGGTGTAGAATTTTAAATCATctctaac
>XM_007254259.3
tgtgttgtgtgagctATGGAGAGGGTGTGTGATGGTAGGACAGAGTCGAATATTCCAGCAATGAGATCTAAAAGGGTATGCATGACCAACTGTCCTACCCTCATTGTGACTGTGGGATTGCCGGCCAGGGGAAAAACCTACATTTCTAAGAAACTCACTCGCTACCTCAACTGGATTGGTGTACCGACTAAAGagtttaatgtTGGGCAGTATCGGAGGGAGTGCGTGAAAATATACAAGAACTTCGAGTTCTTCCGCCCTGACAATGAAGAGGGGCTAAAGATCAGGAAgCAGTGTGCTCTGACTGCGCTGAACGATGTCAGACAGTACCTCAGTGTGGAAGGAGGACAAGTGGCTGTATTTGATGCCACTAACACTACAAGAGAGAGGAGGGGGATGATTATGAGGTTTGCAGAGCAAAATGGCTACAAGGTGTTTTTTGTGGAGTCTGTTTGTGAAGACCCTGAAGTTATTGCCCAGAACATTGTACAGGTGAAGTTGGGCAGTCCAGACTACATTGACTGCAACACTGAAGAGGCTGTTCAGGACTTCATGAAGAGGATCAAATGTTATGAAAACTCTTATCAGCCACTGGATGAGATTTTAGACAGGGAGCTGTCCTACATTAAAGTGATGGATGTGGGTCGACGATATTTAGTAAATCGTGTGCAGGATCACATTCAGAGCCGGATTGTGTATTACCTGATGAACATCCACATCACTCCACGCTCCATCTACCTCTGTCGACACGGAGAGAGCGATCTTAACATCAGAGGACGCATTGGTGGGGATTCAGGCCTGTCAACCCGAGGGAAAGAGtttgCACATTGTCTAGGAAAATTCATTCAGGATCAGAATATAAAAGATCTGAAAGTTTGGACCAGTCAGATGAAACGAACCATCCAAACAGCCGAGGCTCTGGGTGTTCAGTATGAACAGTGGAAAGCTCTCAATGAAATTGATGCTGGAGTATGTGAAGAGATGAGGTATGAAGAGATCCAGGAACATTACCCACTGGAGTTTGCTCTGCGTGACCAGGACAAGTATCGCTACCGTTACCCTAAAGGAGAGTCGTATGAGGACCTGGTACAGCGTCTGGAGCCGGTGATCATGGAGTTGGAAAGGCAGGAGAATGTTCTGGTCATCTGCCACCAGGCTGTGATGCGCTGCCTTCTCGCTTACTTCTTGGACAAAAGCGCAGATGAGTTGCCTTATCTGAAATGTCCCCTACACACCGTGCTGAAGCTGACCCCAGTGGCTTATGGATGTAAAGTACAGTCCATCTATCTCAATGTGGAGGCAGTGAACACCCACAGGGACAAACCCGAGAATGTCAATATTTCCCGTCTGTCGGAGGAAGCTCTTTTCACAGTCCCGGCCCACCAGTAACCCACATATCTCAGACACCGCACACAGCCGTCAGACACCAGACCCTCTTCACCTGATCAGCACTCCTGCTTCATTAGTCTTATTTTGtagatcttttttgttgttgttgatccTGAAGCATACAGAATATGCatgatttgattattttttcttattagtGTTAAAAGTGATGACTGGAATCCAGTTCTTTGAGTATAAACCCTAGTTTTGCGGggtgagtgtgtttacatgagTGTCATTTTGCAAACTTAATGCCAGTGCAGAATGGATGTGAAGATCATTTTTGGGGACAaaagttttctattttttttcccaatatattttgtttccaagattttttttcttaagtattgttgtttttgttttgttttttctttgactGATTTCATACATTCCTTGAAGAAATATTGTACGTCCCTCTTGggaagacttttgtactatttctaTTTGTTAATAGCACTTTCTtacctttttgtttctttccttttcttgtctttttttggtAATGGTGATGTTGGTGGCGATGTTGGGGGTATAGTGAAATACACTGTGCAACACAAACCAAAGTCTATTGAAGACTTCTATAAGCTCAGTAAGTTTTATTCATTCCTCTATTCagtctaaattaatatttaaatcccaaagagcaaaaaaaaaaaaaaaaaattaaaaataagcaGTTGAGGCTAAATGTGCTGATTTCACGTTTTAGCAAGCCACCGTAAAAGTGTATTGGTCAGATTTTGACCGGTGGCTGGTATTTAAAGTAATGCTAATTTGGTTAAAGGGTTTGCTGGTATGTGGCGCTAGTGTTGCTAATAGTAATTGTTTCCTGGAAGTTGTGtatctttttatgttttctttgaaATCTCATTAGAACAGTATGTAAAAATGATTTTCAATGTTTAACCAACTTTATTAATGTCTTACTGAACCTTCAACTGGTGTAGAATTTTAAATCATctctaac
>XM_007254260.3
CCACACTGAGCGCTTGTAGCACGCTGGCACGCGCAGGGCTCCAGCAACAGCATGAGAGGCTGCACGCGCCACCGGGACAGGGCAGTATGCATGACCAACTGTCCTACCCTCATTGTGACTGTGGGATTGCCGGCCAGGGGAAAAACCTACATTTCTAAGAAACTCACTCGCTACCTCAACTGGATTGGTGTACCGACTAAAGagtttaatgtTGGGCAGTATCGGAGGGAGTGCGTGAAAATATACAAGAACTTCGAGTTCTTCCGCCCTGACAATGAAGAGGGGCTAAAGATCAGGAAgCAGTGTGCTCTGACTGCGCTGAACGATGTCAGACAGTACCTCAGTGTGGAAGGAGGACAAGTGGCTGTATTTGATGCCACTAACACTACAAGAGAGAGGAGGGGGATGATTATGAGGTTTGCAGAGCAAAATGGCTACAAGGTGTTTTTTGTGGAGTCTGTTTGTGAAGACCCTGAAGTTATTGCCCAGAACATTGTACAGGTGAAGTTGGGCAGTCCAGACTACATTGACTGCAACACTGAAGAGGCTGTTCAGGACTTCATGAAGAGGATCAAATGTTATGAAAACTCTTATCAGCCACTGGATGAGATTTTAGACAGGGAGCTGTCCTACATTAAAGTGATGGATGTGGGTCGACGATATTTAGTAAATCGTGTGCAGGATCACATTCAGAGCCGGATTGTGTATTACCTGATGAACATCCACATCACTCCACGCTCCATCTACCTCTGTCGACACGGAGAGAGCGATCTTAACATCAGAGGACGCATTGGTGGGGATTCAGGCCTGTCAACCCGAGGGAAAGAGtttgCACATTGTCTAGGAAAATTCATTCAGGATCAGAATATAAAAGATCTGAAAGTTTGGACCAGTCAGATGAAACGAACCATCCAAACAGCCGAGGCTCTGGGTGTTCAGTATGAACAGTGGAAAGCTCTCAATGAAATTGATGCTGGAGTATGTGAAGAGATGAGGTATGAAGAGATCCAGGAACATTACCCACTGGAGTTTGCTCTGCGTGACCAGGACAAGTATCGCTACCGTTACCCTAAAGGAGAGTCGTATGAGGACCTGGTACAGCGTCTGGAGCCGGTGATCATGGAGTTGGAAAGGCAGGAGAATGTTCTGGTCATCTGCCACCAGGCTGTGATGCGCTGCCTTCTCGCTTACTTCTTGGACAAAAGCGCAGATGAGTTGCCTTATCTGAAATGTCCCCTACACACCGTGCTGAAGCTGACCCCAGTGGCTTATGGATGTAAAGTACAGTCCATCTATCTCAATGTGGAGGCAGTGAACACCCACAGGGACAAACCCGAGAATGTCAATATTTCCCGTCTGTCGGAGGAAGCTCTTTTCACAGTCCCGGCCCACCAGTAACCCACATATCTCAGACACCGCACACAGCCGTCAGACACCAGACCCTCTTCACCTGATCAGCACTCCTGCTTCATTAGTCTTATTTTGtagatcttttttgttgttgttgatccTGAAGCATACAGAATATGCatgatttgattattttttcttattagtGTTAAAAGTGATGACTGGAATCCAGTTCTTTGAGTATAAACCCTAGTTTTGCGGggtgagtgtgtttacatgagTGTCATTTTGCAAACTTAATGCCAGTGCAGAATGGATGTGAAGATCATTTTTGGGGACAaaagttttctattttttttcccaatatattttgtttccaagattttttttcttaagtattgttgtttttgttttgttttttctttgactGATTTCATACATTCCTTGAAGAAATATTGTACGTCCCTCTTGggaagacttttgtactatttctaTTTGTTAATAGCACTTTCTtacctttttgtttctttccttttcttgtctttttttggtAATGGTGATGTTGGTGGCGATGTTGGGGGTATAGTGAAATACACTGTGCAACACAAACCAAAGTCTATTGAAGACTTCTATAAGCTCAGTAAGTTTTATTCATTCCTCTATTCagtctaaattaatatttaaatcccaaagagcaaaaaaaaaaaaaaaaaattaaaaataagcaGTTGAGGCTAAATGTGCTGATTTCACGTTTTAGCAAGCCACCGTAAAAGTGTATTGGTCAGATTTTGACCGGTGGCTGGTATTTAAAGTAATGCTAATTTGGTTAAAGGGTTTGCTGGTATGTGGCGCTAGTGTTGCTAATAGTAATTGTTTCCTGGAAGTTGTGtatctttttatgttttctttgaaATCTCATTAGAACAGTATGTAAAAATGATTTTCAATGTTTAACCAACTTTATTAATGTCTTACTGAACCTTCAACTGGTGTAGAATTTTAAATCATctctaac

Function

NR:

description
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4-like isoform X1

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0006000 fructose metabolic process biological_process
GO:0006003 fructose 2,6-bisphosphate metabolic process biological_process
GO:0003873 6-phosphofructo-2-kinase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004331 fructose-2,6-bisphosphate 2-phosphatase activity molecular_function

KEGG:

id description
K19030 PFKFB4; 6-phosphofructo-2-kinase / fructose-2,6-biphosphatase 4

RNA

RNA id representative length rna type GC content exon number start site end site
TU157016 False 910 lncRNA 0.49 1 36342985 36343894
XM_007254258.3 True 2521 mRNA 0.43 14 36350033 36359777
XM_007254259.3 False 2359 mRNA 0.42 14 36343979 36359777
XM_007254260.3 False 2368 mRNA 0.42 14 36343130 36359777

Neighbor

gene id symbol gene type direction distance location
LOC103023734 NA coding upstream 2959 36335569 ~ 36340026 (+)
efcab12 NA coding upstream 7495 36330318 ~ 36335490 (+)
uroc1 uroc1 coding upstream 12949 36321843 ~ 36330036 (+)
LOC103023094 sec61a1,LOC103023094,LOC102228108,LOC108440718,LOC107384934,LOC106518493 coding upstream 22955 36314267 ~ 36320030 (+)
LOC103024783 ip6k2b,LOC103024783,LOC108440711,LOC107585112,LOC107673575,LOC107711042,LOC108272042,LOC107748392 coding upstream 51172 36287057 ~ 36291813 (+)
sumf1 sumf1,LOC107673603 coding downstream 68693 36428470 ~ 36433844 (+)
tsfm tsfm coding downstream 86614 36446391 ~ 36449832 (+)
LOC103021650 myl6,myl6b,LOC103021650,LOC108440770,LOC108271738,LOC107390870,LOC105013534,LOC107570608,LOC106950810 coding downstream 91221 36450998 ~ 36458089 (+)
LOC103047611 LOC108440812,LOC108271743,LOC107711051,LOC107585122,LOC107673583,LOC107582696 coding downstream 200034 36559811 ~ 36576516 (+)
LOC103047301 NA coding downstream 216841 36576618 ~ 36596744 (+)
G116155 NA non-coding upstream 36223 36306350 ~ 36306762 (+)
G116138 NA non-coding upstream 119407 36189774 ~ 36223578 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding upstream 342929 35990033 ~ 36000056 (+)
G116050 NA non-coding upstream 409779 35930924 ~ 35933206 (+)
LOC111193772 NA non-coding upstream 443592 35894947 ~ 35899393 (+)
G116255 NA non-coding downstream 57031 36416808 ~ 36462597 (+)
LOC111193778 NA non-coding downstream 141456 36501233 ~ 36503562 (+)
G116349 LOC108440912,LOC108439999 non-coding downstream 372371 36732148 ~ 36742014 (+)
G116359 NA non-coding downstream 463687 36823464 ~ 36831576 (+)
G116356 LOC103042096,LOC108440962 non-coding downstream 465517 36825294 ~ 36827868 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 354925 35982119 ~ 35988060 (+)
tomm6 NA other upstream 375107 35958543 ~ 35967878 (+)
G115931 NA other upstream 608626 35730379 ~ 35734359 (+)
G115917 NA other upstream 666950 35642874 ~ 35676035 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other upstream 783259 35553601 ~ 35559726 (+)
LOC103044253 LOC108440873 other downstream 297615 36657392 ~ 36713884 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 740237 37100014 ~ 37121327 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 1165074 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 2030500 38390277 ~ 38394530 (+)
G116997 NA other downstream 2999094 39358871 ~ 39359388 (+)

Expression


Co-expression Network