G116255



Basic Information


Item Value
gene id G116255
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36416808 ~ 36462597 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU157052
cattcacacacacacacacacacacacacacacacacacacacacacacacttacaaacacacattctGAGCTTCAGTAAATGAAATATATGGTGTGATATGggcttttttatgttaaaacacTTCTGATTACAGATGGACTAATTCTACCTGTTTTCTTGTATCATACACAATCCACACACATCTCCACTGACCCAATCCAGAACCAGAAATATCCCCTGCTGTTCACACACGTGGTCAAGTCTGTCAATTCACTATTGGCAATGAACTGGTGAACTCGAAACCCAAACCAGTCGTCTAGGCTGACCATATAAAGCAAGACAGTTgatcttaaaaaagaaaaacactataaagacattaaaacgctcattgtTTTAAACTGGGGTGAAAGAGACTGCAGACAGAGTCGCCTCTTACAGtatgctgctaactgcaaacaaacacacacatacttaaaGAGTGGAAAGGTTACAAGCTTATAACAGACTCTCCAAGTTTACAGTACATGGTTTTTCATCTACAGTCAAAGACAAGTTTCATACAAGGCAAAACATCTTCACTGCTATTTTTTTgccctcattttttttcttccgtCATGCTAAAGGTTACTTGtacgtaaaaaataaagtaagcaCAACAGGCCAACCCACTAAAGCTTTCACATTTTCCCAAGAGTAAAACCAACAGTCACACATACAGAGTAACAAATACAAAGTCAAGTTTCTTTTCAAATTCGTTCCAAATGGAGTGCTTCTATTTCAACAAATACAAAGATTAAGTGAGAGAAAGGAGACTGCTTAAAGGACTTTTAAGTGCTTCAGGTCAAATCTGACTTCTTGTCTCCAAAAGTAAAAACAGGGAAACATTCTAAAAAGTGcagctttttgttttgtttacaggCATAAGTACCTACACTGTGTTTAGATGACAGTTACCTCTGGATTGTGGATTCTGTAGCTTGTAGCTTGTTGTAGTGCTCAGTAAACATTAACCGAGAAGAGGCTGGAGCCTGTCTACAAATCCCAAAAGGACCTTCAATACTGCTTCTGGTGTTCTGATGCAAACATAAGGTTAAAGAATACTGTTCATCTCcattctgcctgtctgtctgtctctctatctgtctgtctgtcagtgtttgtgttttttgataTGTTTAAGTCAGAagtttgtgtggtttgtgtttgtttcttcTCTGGCTGTATAACAGGGGTTGGTCCAAACAGGTCTCTAAGGCTGCACAGATTCAGGTGGGCTTTTCTTGTCAAACACTGAATCAGTAATTTTGGCAATTTatctttttgtttacagagaACTACATTTTCTCTCCCAAAAACAAAGTTAAAGATTAAAAACGACAATTTACTTCCCTTTGTTTCCCTGTCTCAATCtcgtctctttctctatctctttccaTCCACTGCCTTATATTCCTCAAACTCACTGCTTGCTTATTGTGATGGGGGCACCGGGGCATTGGGATGGAGGGAATCCCCTGCTAGTGGAgtgctgga

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU157052 True 1514 lncRNA 0.39 2 36416808 36462597

Neighbor


gene id symbol gene type direction distance location
LOC103023734 NA coding upstream 76782 36335569 ~ 36340026 (+)
efcab12 NA coding upstream 81318 36330318 ~ 36335490 (+)
uroc1 uroc1 coding upstream 86772 36321843 ~ 36330036 (+)
LOC103023094 sec61a1,LOC103023094,LOC102228108,LOC108440718,LOC107384934,LOC106518493 coding upstream 96778 36314267 ~ 36320030 (+)
LOC103024783 ip6k2b,LOC103024783,LOC108440711,LOC107585112,LOC107673575,LOC107711042,LOC108272042,LOC107748392 coding upstream 124995 36287057 ~ 36291813 (+)
LOC103047611 LOC108440812,LOC108271743,LOC107711051,LOC107585122,LOC107673583,LOC107582696 coding downstream 97214 36559811 ~ 36576516 (+)
LOC103047301 NA coding downstream 114021 36576618 ~ 36596744 (+)
espl1 LOC107576721 coding downstream 135508 36598105 ~ 36616096 (+)
pfdn5 pfdn5,LOC107711057,LOC107673463,LOC107740577,LOC107667318 coding downstream 154779 36617376 ~ 36623011 (+)
LOC103045881 NA coding downstream 162438 36625035 ~ 36642464 (+)
G116155 NA non-coding upstream 110046 36306350 ~ 36306762 (+)
G116138 NA non-coding upstream 193230 36189774 ~ 36223578 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding upstream 416752 35990033 ~ 36000056 (+)
G116050 NA non-coding upstream 483602 35930924 ~ 35933206 (+)
LOC111193772 NA non-coding upstream 517415 35894947 ~ 35899393 (+)
LOC111193778 NA non-coding downstream 38636 36501233 ~ 36503562 (+)
G116349 LOC108440912,LOC108439999 non-coding downstream 269551 36732148 ~ 36742014 (+)
G116359 NA non-coding downstream 360867 36823464 ~ 36831576 (+)
G116356 LOC103042096,LOC108440962 non-coding downstream 362697 36825294 ~ 36827868 (+)
G116353 LOC108440955,LOC108272218,LOC107711062,LOC100304745,LOC107585131,LOC107673602,LOC103386112 non-coding downstream 370892 36833489 ~ 36834522 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 57031 36342985 ~ 36359777 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 428748 35982119 ~ 35988060 (+)
tomm6 NA other upstream 448930 35958543 ~ 35967878 (+)
G115931 NA other upstream 682449 35730379 ~ 35734359 (+)
G115917 NA other upstream 740773 35642874 ~ 35676035 (+)
LOC103044253 LOC108440873 other downstream 194795 36657392 ~ 36713884 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 637417 37100014 ~ 37121327 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 1062254 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 1927680 38390277 ~ 38394530 (+)
G116997 NA other downstream 2896274 39358871 ~ 39359388 (+)

Expression



Co-expression Network