G116333 (espl1,LOC107576721)


Basic Information

Item Value
gene id G116333
gene name espl1,LOC107576721
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36610046 ~ 36616042 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU157142
CCTGAgagttaaaaacagaaaatttcACATTTCCTTacttacacaaattaaaaaaggcttaacaatttaaatacaatatttctaAAAACGTTTATAAAAGTTTAAGAAAATCACACATgcatatattaaacattaaagaaTTCCACATGAAGCTGAAATTTTAAATGGCTCAGTGTTGGTAAGTATGCATCAGCCATACCACACTTGATATTATAAACAAATCCAAAACTATACACAGTTTGCTTCAAAATCTGAATACTGTGACTGAACACATCTACTCTAGCTTCAGGTCTATTGTAGGTGTACAGGTAGGCCATATGCAATTGGTGCAGCACCAATCATGTGCTTGAGGTGTGTGGCATCTCGCGAGGTACTGAGGTGCTGAAGTAAAGAAGAACCTGAACCGCCAGACAGCCAAGACTGTAACAGGGCGGAAGTGAACCGATCAATGTCACGATCAGTTACATCCCACAAGTTCCCCAACACCAACGGGcatCCAGCGATGAGGTAGCTAAGGATGATGCCGGTTCCCTCGAGGCAGCCCTGCACACTAAGTGCTGCACTACTGCAGCCAAAAAGCAGAGCCGCCGCTTGCACGGGTCCCTTCATCACCCTCTGAGCATCCAGGAAGCGTGCCCCTGCTCCATGTCCTACATAAATATACAAGTCTTTGGTGGTTATTGCTTCCTGTAGTTTATCAGGATCAGGAGAAACTCCACACACTCCCTGCCATGTCTTCTCACTAGTAAACCAATCTCTGAAGCGCTTTTCAGTCTCAGGCAGGTTTCCATCTGGGttcaatacaaaataaacttgcTGGGGATCTACACCACGTGACAGCACACAGTCTGAATTCATCTTTTGGAGATGGCCATGTCCTAGTACAGCCTGTAAAGAAGGCAGGCGGGAGACAGAGCGAGGCCTCAAACAAGAGATGTTCTCCCATGGCAACCTTTGAAGGTACTTGTCTAAGATTAGAACTGTATGTCCTTGAGGCTCTTCCCTCCCTTTCAGTTCAGACACACCCTTCTGTAGAAGCTTCAGGAAATTTCCCTCCATCAGACCTGCACCCTCAGCCAATGAGTGTAGGTCTGATTGAGAGAgcagaggagctgcagaaagaaCCACCTTAAGCATGCCCGAAGTGATCTTTGCTCCTTCTATCGAGGCTTGGAGAGTTTCAAGCTGAACTTGAAGTTTAGGGTCAGAAGTCAAGGGGAGGAGCAAAGCTCGCCATATCCCTAAGgcctcctccatctcctcaagCAGTCTCTGTACTCGAGCATCCAGGGCCTTCCTGCAATCCCACCACTGAACTTTATCTGCCACATTGCTCACTTCCTTCTGCCCCTGGAGCActccctccatctcctccaGCAAAACAGGCATCGAGCGAGGTCTGTGTGCTGTCGGGATCCTGATGGTGATGGGATCACAGTCATGCTCCAGGCGTGTGAGAAGAATGGTACTGCCAATCTCACCAGGAGACACAGCAACAAGCGAGAGTAAACAGACTGTTACACCTGCTGGCAGGTCTTTGAGCTGCTGTGTGAATTCCTGGCAGTGTGTTTTTGGGAAATGTGCAGATTGTGTTAAGCTGAAGGAGTAGATGCTCTCCAGGGCAGACAGTGTTTTCATCTGTGACTGTAGGGAAGACTCCTCTAGGCTCAAAGCACTCAGATTCTCCACTATATCACCACTGGACTTCTTTAATTTCCTTAGCCGATTTGCCAGGTACCGGGTCATGTGATGTCGAGTGGACACGCCCATTGACTGAGCGTGAAGCATGGCTGTGGTGAGGGGATCAGAAAGACCTAGCAACTGGGCCAGCAGTGAGCACAGGTGAGGGTAGAGGGAGGGGCTTGGAAAATGATGCAGAAGGACCCAAGCAGAGCACAGGAGTGACCGGACCACCTCTAAAGACAGCTCAgCTGGTGCTACATGCGTGTGTGGTAATGATGCATGACCTCCCACTCCATTCTGTCCAATGCTTCTGAGCTCATTTACGCAATCTCGGTTCAAATCTGCTCCTAGGTCTCTCCTTAGCACCTCAAAGTCTGTATCCTGGCCATCTGCAGGACTCCTGTGTTTTGTGTCTCGGAGTCAGATTCTTGAAGGTTCTCTAAGCTGATGTCCAGAccctcttcatcttcatcttctttgATCATCCTCATCCGCTCTGGTGGCTCCACACCATTTGAATTTTGAGCTTTTCTTGATCGTCCCC

Function

symbol description
espl1 Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in meiotic chromosome separation. Predicted to act upstream of or within chromosome segregation and proteolysis. Predicted to be active in cytoplasm; microtubule cytoskeleton; and nucleus. Orthologous to human ESPL1 (extra spindle pole bodies like 1, separase).

NR:

description
PREDICTED: separin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157142 True 2227 lncRNA 0.48 13 36610046 36616042

Neighbor

gene id symbol gene type direction distance location
LOC103029840 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC106565516 coding downstream 89938 36488583 ~ 36520108 (-)
smarcc2 smarcc2,LOC107711050,LOC107667400,LOC107748388 coding downstream 129845 36459983 ~ 36480201 (-)
LOC103022488 LOC108439971 coding downstream 167291 36433932 ~ 36442755 (-)
LOC103030168 itpr1a,LOC108440748 coding downstream 182337 36360752 ~ 36427709 (-)
LOC103029202 LOC108440675,LOC108271813,LOC107711038,LOC107673578,LOC107667363 coding downstream 496006 36082114 ~ 36114040 (-)
LOC103029516 NA coding upstream 113921 36729963 ~ 36733391 (-)
LOC107197751 LOC108439999,LOC108440912,LOC107580767 coding upstream 121704 36737746 ~ 36742046 (-)
LOC103042096 LOC103042096,LOC108440962 coding upstream 209243 36825285 ~ 36830441 (-)
LOC103041794 LOC108440955,LOC108272218 coding upstream 218028 36834070 ~ 36839043 (-)
LOC103041181 NA coding upstream 266768 36882810 ~ 36892252 (-)
G116334 espl1 non-coding downstream 3125 36598093 ~ 36606921 (-)
G116331 NA non-coding downstream 13423 36596406 ~ 36596623 (-)
G116316 NA non-coding downstream 40553 36566293 ~ 36569493 (-)
G116310 NA non-coding downstream 55259 36554552 ~ 36554787 (-)
G116309 NA non-coding downstream 68040 36540522 ~ 36542006 (-)
G116337 pfdn5,LOC107711057,LOC107673463,LOC107667318,LOC107740577 non-coding upstream 1344 36617386 ~ 36623480 (-)
G116412 LOC108440873 non-coding upstream 75915 36691957 ~ 36695445 (-)
G116413 LOC108440873 non-coding upstream 80863 36696905 ~ 36699370 (-)
G116399 LOC108440873 non-coding upstream 91727 36707769 ~ 36708173 (-)
G116398 LOC108440873,LOC103043543,LOC108440897,LOC107667378,LOC107711060,LOC108271751,LOC107582700 non-coding upstream 94214 36710256 ~ 36721893 (-)
LOC103028059 ghrl other downstream 547762 36056563 ~ 36062284 (-)
LOC103031109 uqcc2,cf125,LOC108440614,LOC107580205,LOC107667355,LOC106565356 other downstream 651228 35955109 ~ 35958818 (-)
LOC103034399 LOC108440553,LOC108271943,LOC107584416,LOC107721179 other downstream 729755 35869803 ~ 35880291 (-)
G116068 myhz2,LOC108440470,LOC108443907,LOC107385141 other downstream 794724 35813621 ~ 35815322 (-)
LOC103033855 oxtr,LOC107749620 other downstream 1758894 34825836 ~ 34851152 (-)
LOC103023810 NA other upstream 406133 37022175 ~ 37031363 (-)
G116581 eif4b,LOC108441049 other upstream 425319 37041361 ~ 37045788 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other upstream 1617432 38233474 ~ 38248624 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other upstream 1765228 38381270 ~ 38384598 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other upstream 2014595 38630637 ~ 38899446 (-)

Expression


Co-expression Network