G116337 (pfdn5,LOC107711057,LOC107673463,LOC107667318,LOC107740577)


Basic Information

Item Value
gene id G116337
gene name pfdn5,LOC107711057,LOC107673463,LOC107667318,LOC107740577
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36617386 ~ 36623480 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU157150
AAAGTCAAGGCTGTCCAACAGTTTAAAAACTGAGGGCCATACCTATTCTACAGTCCTAAATGTTGGCTAAACTTTGTTTGAAACCATAAGCAGTaactttttatataaattagcTCTTCCTTAATTGGGACTAACTCTGAACAGCAACGTTTCAGTAGAACAGAAATGGTTGTGGATGTTCCTGTTTTTGCTGATTTATCATGAATCATCCTCTTGTTTAGAGACTCTTTAGAAATATAGACTAGGAGCAACAATTCAAACATATACCGGTACAAGCAGTACTGATTTTAGTAAGGCATTAATTACCAAAGCAAACCTTCCCTAGAAACAGCAATTTAACTGTTAAGAGGTACTGTAACTGTTACAAATCATTTTGCTGCTcacatttaatgaaaaaaaaatgaaagtgaaaaaagatcaaagtatttaaaaaaacaaactaagaCATTAAAAGAGTATCATGTAAGAGTTTGTGTTCATAACCAATTTATTCCTTTTAATGCGGCTTCTGGACCTGGGCATTCCAAAGTAGGCCTCAAATGTGTAATAAATAGTTCCTCCAGCACCTGAGGCTAATATCAGGAAATGTATCTCAATTCTAAAGTCAGCATAAGGCAGCAtgcacaggaaaaaaaatgtattaatttattatagcGTCAGTAAGCAGAGTTTATTTGCCATTTAAATGACTGTGAAATCCAATTTGAAAAGTCAATGTGTTAAGTACAATAACATGAATATGTTattgaacatgaacatgaataCAGGCTAGTTTGTATGTgcgtttgtgtgagtgtttttagGCCTTAGTGGTTCCGGACTGTGACGACTGTTGACTGTGCAGCTGCTGTAGCTTCATGTTCATGACTTCAACCACAGCTTGCTTCATTGCATGTTTTTCCTGAAGAGCAGGCTGAACCTTCTCAATCTGTTTTGTTAGGAAGTCAATTTTACGCTTAAAGAATTCTTTACTGTCCTCCACAttTTTCTCTACAAAGTAACCAGTTCCCACATCTACCAATACATGTTCTACATCATTCAGGGTTCCTGGAACATACATAGAGCTGGTAAGAGGAACAAGTAATTCTTTtcCTTCATTACTCTTTTTGAGAACATTCAGACTGTCCTTAGCTTCTACATACTTTGTTTGGACCACTTTCAACTGGGCTATGGATGAGGACAGGAACTCTGTTTCCTGTTCGAGCTGAGTCTTCAATCCCTCCAGCTGAGACAGAGATAACTCAGTCAGATTCACCGCCATGTTGAGAAAAAGACAATAAGGGACACTTCCGG

Function

symbol description
pfdn5 Predicted to enable unfolded protein binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to act upstream of or within protein folding. Predicted to be part of prefoldin complex. Predicted to be active in cytoplasm. Orthologous to human PFDN5 (prefoldin subunit 5).

NR:

description
prefoldin subunit 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157150 True 1293 lncRNA 0.37 6 36617386 36623480

Neighbor

gene id symbol gene type direction distance location
LOC103029840 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC106565516 coding downstream 97278 36488583 ~ 36520108 (-)
smarcc2 smarcc2,LOC107711050,LOC107667400,LOC107748388 coding downstream 137185 36459983 ~ 36480201 (-)
LOC103022488 LOC108439971 coding downstream 174631 36433932 ~ 36442755 (-)
LOC103030168 itpr1a,LOC108440748 coding downstream 189677 36360752 ~ 36427709 (-)
LOC103029202 LOC108440675,LOC108271813,LOC107711038,LOC107673578,LOC107667363 coding downstream 503346 36082114 ~ 36114040 (-)
LOC103029516 NA coding upstream 106483 36729963 ~ 36733391 (-)
LOC107197751 LOC108439999,LOC108440912,LOC107580767 coding upstream 114266 36737746 ~ 36742046 (-)
LOC103042096 LOC103042096,LOC108440962 coding upstream 201805 36825285 ~ 36830441 (-)
LOC103041794 LOC108440955,LOC108272218 coding upstream 210590 36834070 ~ 36839043 (-)
LOC103041181 NA coding upstream 259330 36882810 ~ 36892252 (-)
G116333 espl1,LOC107576721 non-coding downstream 1344 36610046 ~ 36616042 (-)
G116334 espl1 non-coding downstream 10465 36598093 ~ 36606921 (-)
G116331 NA non-coding downstream 20763 36596406 ~ 36596623 (-)
G116316 NA non-coding downstream 47893 36566293 ~ 36569493 (-)
G116310 NA non-coding downstream 62599 36554552 ~ 36554787 (-)
G116412 LOC108440873 non-coding upstream 68477 36691957 ~ 36695445 (-)
G116413 LOC108440873 non-coding upstream 73425 36696905 ~ 36699370 (-)
G116399 LOC108440873 non-coding upstream 84289 36707769 ~ 36708173 (-)
G116398 LOC108440873,LOC103043543,LOC108440897,LOC107667378,LOC107711060,LOC108271751,LOC107582700 non-coding upstream 86776 36710256 ~ 36721893 (-)
G116407 NA non-coding upstream 104511 36727991 ~ 36728239 (-)
LOC103028059 ghrl other downstream 555102 36056563 ~ 36062284 (-)
LOC103031109 uqcc2,cf125,LOC108440614,LOC107580205,LOC107667355,LOC106565356 other downstream 658568 35955109 ~ 35958818 (-)
LOC103034399 LOC108440553,LOC108271943,LOC107584416,LOC107721179 other downstream 737095 35869803 ~ 35880291 (-)
G116068 myhz2,LOC108440470,LOC108443907,LOC107385141 other downstream 802064 35813621 ~ 35815322 (-)
LOC103033855 oxtr,LOC107749620 other downstream 1766234 34825836 ~ 34851152 (-)
LOC103023810 NA other upstream 398695 37022175 ~ 37031363 (-)
G116581 eif4b,LOC108441049 other upstream 417881 37041361 ~ 37045788 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other upstream 1609994 38233474 ~ 38248624 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other upstream 1757790 38381270 ~ 38384598 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other upstream 2007157 38630637 ~ 38899446 (-)

Expression


Co-expression Network