G116359


Basic Information

Item Value
gene id G116359
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36823464 ~ 36831576 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU157189
tttttcttcaGCATTCCTTTTGAACTCATTTgggagcgccctctggtggtgTAACAAACCTGGAGGAGGTTCTTCAGTGGGTAGTCTCCTCTCTAAATATTCTCTGGTTGTAACAATGTTTTGAGCAACCATAACAATTGTTTCTCACAGCGTTACCGTGTCGTTTCCTGAGACACAgcgcagagcagagcagagctgctGGACCAGGACTGAGACTGTGGCCAGTTGTCCTGCTGATGAGCCATCATCTTTATCagcatattacatattaaggcTGGTAATTGATCAGtGTCTGAAGCacaatgcagagagagagagtcctgTTTCCTGAAGAAATGGCTGCTCATGGAATTCCAAGAATTCAGCCTGGGATCTATTTACAAAGATCccccacactcacactcacacagggCATTGCCCATGAAGGAAGATATTTGTTTGAATATTTGACCCATTTGCTAACAAGGCCATGACAGAAGCAGGCAGGAATTTACTGCCTTCGTTGTGCAGCTTTACTGAACCAAACACATTCTAAACAGAATTTAATGAACTAGATTTGGATTGAGATTGGATTTTCCAGTACAACTACACATGCCCTGCTATGTGGTTCCCTTTGCCTTGCTTGCACTGTGCTTTAAAGGTTAATGTGATGAATGCACACAAAAGTCCCAGCTGCTAAAGTCATTCTCTCCAGCCTAGAACTACACCACACTTTTACTATTGCAGGGCACACACAGAATACAATAAGTTACCATGTGTATGCAGTAGTCTTGGACTTTGTCTTAGTTCTATTAGTGGGTGAAACTGATAGTGGGCTGTGTTAATATGTGTCCATTCCTGGGCTGAGTGAGTGAAAATACATAACTATTAAATTtccccctctctcacacacaacaaTCTGCATTTTGCTGTGAGCGAAAAACACTGCTAACCATTCAATTGaccttttacttcatttttctttctttttatttgtcttgTGCTCTCATTCAAATGCACAgtgcaaaaaagaaagaaaaattaagaaaaggaaaagactttctttctgtctctcagagacacacacatacacacacaaaatacatcTTACCTCCTCATTGCCAGGTGTATCCACTCTAACATAGCACTGTGCAAATCCTCCAGGCTGACAGTGCTGTATCTTCAGTCTAGAACATGCTgtcttcctcttctttctccttctttcatTCTCCCTCTCTGCTCCCAGTGACAACAGCCACACATATGCAGACCCTCCCCCCACTCCTCTCCACTCCTCCCCTCCCCCGCCTTCTCTTTGCCTCCAAAGTATTTAAGCTCTTGGAAAGAGAATGCccccagcagcagcacaacaaTGACTGCTTGTTTGTCTCACTTCTAAGTCTTACCACAGAGGCACCCGCTCAGTAAGGTAGCCTACATTACTCtcttgtgtatgtgtgagttttttttatcgCCCCAGCTTGCTGAAGAGTGTCTAAAGTGCATAGGCACACATACATGGCCCATAGCGGGTTTTGTATACACAAAGCTGTACTGAATCTATGGTGTTATTAGGGCCTcaataatatagattttatagatgTGAGCAGGTGTAAGTTGTAActaaaccaataaaaacattatatggCTTGTTTGGAGCGTCAAGTGGGTTTACAGGAATCACCTTCGCTATCGGGTGTTGGGAGACAGGTTACATCCTTTAGATAAccaatatatatttctatttaggGCACAACATACAGCATAAAGTAATTAGTAGTAAGGGCTTAGCAGAGACTTTACACACATATGTAAAAAGAAATTTACACAAAATTGGTGCAACCCAGCCCTGGTGGGCCAGATTCCTTTTCCTGTTTTACATACCTGATTCAACTCTTCTGTTAAGTAGTTTAGGAGCTCTCTTAGAAGGTAAACAGCAAATTGTGCTGGACTCCTGCTTCCATGGCCAACCCCTGCTCTAGAGGGCACATAATTATAACCTATTGCAAGAAAGGGCACCCTAGGGGAAACTCAAGTCATTTTCCCCATATGAGGGGCAGCCAAAATGGCAGATATGTATTGGCATTACCTTTTAAGATTACATTATTAGTGGCCCACCAGCAGatttatagctttttttttggtaacttTACTTACACGTGACAGTGGCAGCAGTATGTTGTACCATTGTGTTACTTAGCTAAAACAACTCTGGACTGCAAGTAAAAggcacttattttttttttgtcattattaaTTGTACTGAACATTtttgatgtttcattttttggatacaaagctaggaataatttataattaatatttttaaaaggggCATTTTGATGTGGTCCATAAAAgtccataaaacattttaattcccAACCATTTCTGCAAACATAAATGAGTGAATAGCACACAATCATTAGGTGCAGAACAGATTGTCTTGCTGACTGTTTGTGTGCTTCTGAATGAAGCAAATCTTCAGTTAGAACTGAAGCAGAGCAGTTTTGAGGGAAATTTTGGGACTTATTCACCACTATGTGTATTTTTCAGTTAACTTGATTGTGCTGCTAAATTTATGAAACCTCATATTAAAGCTCCAAGTGAAACTCAGTAACCACACTGCACTATTATCACAATCCTCCTGCCCAAAATACAGAACAGTATCagcattacaaaaaataatgattattgaTTAAAC

Function

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU157189 True 2680 lncRNA 0.40 3 36823464 36831576

Neighbor

gene id symbol gene type direction distance location
LOC103042615 scn8ab,LOC108440919,LOC100304602 coding upstream 4371 36747556 ~ 36819093 (+)
LOC103043543 LOC103043543,LOC108440897,LOC108271751,LOC107582700,LOC107667378 coding upstream 101567 36714888 ~ 36721897 (+)
LOC103045375 atf7b,LOC108440868,LOC108271749,LOC107740570,LOC107711055,LOC107585125,LOC107582698,LOC107667392 coding upstream 168624 36643900 ~ 36654840 (+)
LOC103045881 NA coding upstream 181000 36625035 ~ 36642464 (+)
pfdn5 pfdn5,LOC107711057,LOC107673463,LOC107740577,LOC107667318 coding upstream 200453 36617376 ~ 36623011 (+)
LOC103041493 NA coding downstream 18071 36849647 ~ 36855962 (+)
LOC103040875 krt4,LOC108440969,LOC107667388,LOC106565226,LOC107711067 coding downstream 45072 36876648 ~ 36882405 (+)
LOC103040047 NA coding downstream 73042 36904618 ~ 36919543 (+)
os9 os9,LOC107711069,LOC107582707,LOC107673576,LOC107733587,LOC107585136 coding downstream 116389 36947965 ~ 36961567 (+)
LOC103039123 LOC108441012,LOC105017220,LOC105897894 coding downstream 130650 36962226 ~ 36971698 (+)
G116349 LOC108440912,LOC108439999 non-coding upstream 81450 36732148 ~ 36742014 (+)
LOC111193778 NA non-coding upstream 319902 36501233 ~ 36503562 (+)
G116255 NA non-coding upstream 360867 36416808 ~ 36462597 (+)
G116155 NA non-coding upstream 516702 36306350 ~ 36306762 (+)
G116138 NA non-coding upstream 599886 36189774 ~ 36223578 (+)
G116353 LOC108440955,LOC108272218,LOC107711062,LOC100304745,LOC107585131,LOC107673602,LOC103386112 non-coding downstream 1913 36833489 ~ 36834522 (+)
G116360 NA non-coding downstream 9265 36840841 ~ 36843238 (+)
G116378 NA non-coding downstream 77627 36909203 ~ 36909649 (+)
G116466 NA non-coding downstream 179877 37011453 ~ 37014185 (+)
G116511 NA non-coding downstream 266678 37098254 ~ 37098533 (+)
LOC103044253 LOC108440873 other upstream 109580 36657392 ~ 36713884 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 463687 36342985 ~ 36359777 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 835404 35982119 ~ 35988060 (+)
tomm6 NA other upstream 855586 35958543 ~ 35967878 (+)
G115931 NA other upstream 1089105 35730379 ~ 35734359 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 268438 37100014 ~ 37121327 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 693275 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 1558701 38390277 ~ 38394530 (+)
G116997 NA other downstream 2527295 39358871 ~ 39359388 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 3967895 40799471 ~ 40808545 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032204 NA non-coding NC_007117.7 CM002890.2 39370335 ~ 39378734 (+)