G116413 (LOC108440873)


Basic Information

Item Value
gene id G116413
gene name LOC108440873
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36696905 ~ 36699370 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU157255
GTTACTGTGTATTTATGATCTGacataaaatgttctaaaacagGAATATGACAAACAAGTGTGTTATTAATGAAAACATTATTTAGAgtgaacacacagacacacacacacacacacctggttGTTTCTGCCGTGGTTTGGGCATGTTGGTGACACAGGTGTGGGGGCACATTAGGATGTTACAGGGGTGCAGCGAGCCCTCCAGGAAGAGCTGTTTAGTCTCAGAGATGTGAATGCCCCCCAGAGGAGTTTTAGGCAGAGTGTTGGCAGGGACCAATGCCAGGCAATACAAGCCCACCTGGTGAATGCTGTCTATGGCCTGCAGTACTCGACTCATCCACTGAAAGCTGTCCTCCTCACTGGCATCAGGCCGCTGCTCCGCCACTATTACTATTCGCTCATCATAGAACACAGTCACTGAGAACACAGCAAtcCTGCCCCTGTACACAGTTTTGACTGGCTCCACTGCTAGAGCTGTAGCCACCAGGTCATCAGCATTGTGGCGACGACCACTGACTGTCAGCAGACCCTCATTCTTCCCCACCACGAATATCAGGCTGCCCGGTCCTACAAATCCCAGCAGCCCTGAGCGGACAAACGGAATTTCTCCGATAGGTGCACCACTAGCGTTAACTGGAATAACCTCAAAGGTGTTCTTGGTGACTCCAGACAGGCCATAGTACATGTTTCCCCCGGCACGAGAGTTCACCACAATCTCTCCTATCTCATCAGTCTTACACAGCATGGGTGGCCCATCCG
>TU157256
CCTGCCCCTGTACACAGTTTTGACTGGCTCCACTGCTAGAGCTGTAGCCACCAGGTCATCAGCATTGTGGCGACGACCACTGACTGTCAGCAGACCCTCATTCTTCCCCACCACGAATATCAGGCTGCCCGGTCCTACAAATCCCAGCAGCCCTGAGCGGACAAACGGAATTTCTCCGATAGGTGCACCACTAGCGTTAACTGGAATAACCTCAAAGGTGTTCTTGGTGACTCCAGACAGGCCATAGTACATGTTTCCCCCGGCACGAGAGTTCACCACAATCTCTCCTATCTCATCAGTCTTACACAGCATGGGTGGCCCATCCG

Function

NR:

description
PREDICTED: disco-interacting protein 2 homolog B-A-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157255 True 759 lncRNA 0.50 5 36696905 36699370
TU157256 False 326 lncRNA 0.54 3 36696905 36697835

Neighbor

gene id symbol gene type direction distance location
LOC103029840 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC106565516 coding downstream 176797 36488583 ~ 36520108 (-)
smarcc2 smarcc2,LOC107711050,LOC107667400,LOC107748388 coding downstream 216704 36459983 ~ 36480201 (-)
LOC103022488 LOC108439971 coding downstream 254150 36433932 ~ 36442755 (-)
LOC103030168 itpr1a,LOC108440748 coding downstream 269196 36360752 ~ 36427709 (-)
LOC103029202 LOC108440675,LOC108271813,LOC107711038,LOC107673578,LOC107667363 coding downstream 582865 36082114 ~ 36114040 (-)
LOC103029516 NA coding upstream 30593 36729963 ~ 36733391 (-)
LOC107197751 LOC108439999,LOC108440912,LOC107580767 coding upstream 38376 36737746 ~ 36742046 (-)
LOC103042096 LOC103042096,LOC108440962 coding upstream 125915 36825285 ~ 36830441 (-)
LOC103041794 LOC108440955,LOC108272218 coding upstream 134700 36834070 ~ 36839043 (-)
LOC103041181 NA coding upstream 183440 36882810 ~ 36892252 (-)
G116412 LOC108440873 non-coding downstream 1460 36691957 ~ 36695445 (-)
G116337 pfdn5,LOC107711057,LOC107673463,LOC107667318,LOC107740577 non-coding downstream 73425 36617386 ~ 36623480 (-)
G116333 espl1,LOC107576721 non-coding downstream 80863 36610046 ~ 36616042 (-)
G116334 espl1 non-coding downstream 89984 36598093 ~ 36606921 (-)
G116331 NA non-coding downstream 100282 36596406 ~ 36596623 (-)
G116399 LOC108440873 non-coding upstream 8399 36707769 ~ 36708173 (-)
G116398 LOC108440873,LOC103043543,LOC108440897,LOC107667378,LOC107711060,LOC108271751,LOC107582700 non-coding upstream 10886 36710256 ~ 36721893 (-)
G116407 NA non-coding upstream 28621 36727991 ~ 36728239 (-)
G116434 NA non-coding upstream 100472 36799842 ~ 36820814 (-)
G116426 krt5,LOC108440946,LOC108440969,LOC106565226,LOC103466878 non-coding upstream 155490 36854860 ~ 36855962 (-)
LOC103028059 ghrl other downstream 634621 36056563 ~ 36062284 (-)
LOC103031109 uqcc2,cf125,LOC108440614,LOC107580205,LOC107667355,LOC106565356 other downstream 738087 35955109 ~ 35958818 (-)
LOC103034399 LOC108440553,LOC108271943,LOC107584416,LOC107721179 other downstream 816614 35869803 ~ 35880291 (-)
G116068 myhz2,LOC108440470,LOC108443907,LOC107385141 other downstream 881583 35813621 ~ 35815322 (-)
LOC103033855 oxtr,LOC107749620 other downstream 1845753 34825836 ~ 34851152 (-)
LOC103023810 NA other upstream 322805 37022175 ~ 37031363 (-)
G116581 eif4b,LOC108441049 other upstream 341991 37041361 ~ 37045788 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other upstream 1534104 38233474 ~ 38248624 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other upstream 1681900 38381270 ~ 38384598 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other upstream 1931267 38630637 ~ 38899446 (-)

Expression


Co-expression Network