G116466


Basic Information

Item Value
gene id G116466
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 37011453 ~ 37014185 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU157318
GGTATATAGAGTTAGTACTGTCTAGTATCATGCCACCTTCATGTTAAttgtgtaaaagaaaatgaacacttaagtttttttatttaaacatttatttaacaaatatataGAAGCTTATCTCAAAAAATAACATGCATCATATCCTCTCTAATATTTGGTTAGGCATTTCGCAATCCAGGAATTTGTGGATTGCAGGCTTAAGTGCGTTTGATTACAGGCTTGagtacatttgttttttaactCATGCTTTATATCCAAGCAGAACGTAACAACAACCACACAGTCCACGATAATCAGTATAATACCTGTAGGGTGTCTGTAATTGAACACTTGGTTTTTGACTTGTGTGAAAAATCCCAATCATCAATCTTGGAAAAACAGTGTATATACAAATGAAAAAGTCTTAATATAGTaaacacagaaaacattttatatgtatGACAatccattaaatgtttttttgaccAGTAGAAATACACACAGACTGAAGATTAGGGTTCACCAACTTTGTTTCCCATTTAACTGATCAAGCTCTCCTGGAGGCAGTAATGATAGATGGATCAGGTGGGATTGATTAGTAGTTAAATTTTGCTACAGCATTTTGATTATGTTTAGACTGCAGGTaaattgtatatgttttttaacatcAGATCAGATGTAATGATATGTCTTTCCAGACTGTTTTTGTAAgtgatcagattggatttgcATGTCTGAAGATCACAAACGTATTTcccatggttgctgtggtaataaGGTTGCTGTCAGTAATTCACTTTCAAGCTGCTCAGACTAACAAAATctatctggatacaatctagatatggcAATAATTAGCTTTGGGCAGTCTAAACATAGCAATGTTTGACTATTCAGTTTTCAAATTTAATTCaattgaatatatttttaactacaaattgtattattgtattgtgtaaaaacatacagtatggtTTTCATTGTTCCTTCATAAAAATATAAGACAAagtttacaaaatattttacaaataatattgaacattacattttatctgtgtgtgtgtgtgtgtggtgtgtgagtgtgtgtgtgaatgtgtgtgtgtgtgtgtgaatgtgtgtgtgtgcaaatgaCAGCCAAATGTAGTTTCATTTGCatctataaatacagtatatggctGGAGAGGTTTGTGGTTGGAGAACGTACACTTTTGTGCGTTTGTGCATAGAAcgatatagaaaaataaatacaattcatAATCAtctttaactaataataatcacattCAAATGTAAAGAAGAAATGTGAGGTGGACACGTATTATGTTCTCTGATAGCAAGAAAAAAGCTTTTGGAGGAAGCAGtcttaacattagcattagcttagcattagatTCCAGTTTCCAGTTCGACAATGTCCAGCATTAGGCATGAAGCAGGAAGGAAAATGAGGAAGCATTAGCTAGGTGTGCTTCATTGTTTTCTCCATAGGGAAGCTAGTGGCCAGAAAGCTCTGGACAGCAGGTCTCGGTAGGCCTGGTTGAACTGCCGGTTCATGGCTGCATACAGCAGTGGGTTGATACAGCTGTTAAGCCATGTAAGATTAGCACAGAACATGTGGGCCACCTGTGGAGCTCTGTTGTTCTTGTCTGCGATGTTCAGGAGAATGAAGGGTACGAAGCAGCCGACAAAGCATAAGAAGACAGTGAAGCACATCCGGGTTACACGTTTGAATTCGTTGTCCTGTGGCGTGGATGGTGATGTAGCAGCGTGTGTTGGGGCTGGAGCTTGAGCAGGGACTTTAGATGATTCCTTATTTACTCCATATGAAGATTCCTCAGACCTTTCACCTGTGGTCTGCTGAGAGACAGGGGTGATGGTGGAGATCATTTCGGGCTTTTCCGTCTCATCACTCTTGTATTGATGTATTTCCTGTACTGCTTGGTCACTGATTTCACAGCTTTGAGTTGTTGTGGTCAGGACACCGATCCCACTGTCGTCGGTCCCTTCAGCCTCCAGACGTTTGCGCCTTGAGGAACGCCGGCTGGGCCTGTATTTGATCAGCGCCTTGGCAGCCAAGCGCACCTTAcgatagatcagaaaatagaaaaGGCCAACAAAGCCTAGTCCGAGAAAGAAGTAGAGGAAGAGGAGAACAGTGGTGTAGGGGCGGCCCTTGGTGCGATGGAAGCTGCAGGTGCACACTTGTGGTGTGAATACATAGACAGGCCAAAGGGGGCCGAAACTGGCCAGTCCCAGCGCCCAGGAGCTGACCAAGAGCACAGCTACACCAGTGCGTGACAGCAGCAAGCGAGACACGCGGGATGTCCTGTGAGCAACTACCAAGTATCTGCTGGCTGCGATGAGGCATAATGTAATAATGGACACACTATTGGACAGGAAGAGGAGAAGCCCAAACATTCGACACCAGGAGGCCCCGCCCCTCCAGTGCAGGTGCAGATAAGAGTCAATGCTGACTGGCTGCAGAATGGTGCAGTAGAGAAGGTCAGCTAAAGCCAAGTTTACAATGAGGACGTTGAATCGTGTTCGCAGACGGGTGTCTGTGGCAAAGGCTAGCACAGTCAGAACATTACCCAGAGTTCCAACTATAGTTACAATGGATCCCCACAGAACGCCGAAATAACGGTAGCCTTCCACAGAGGGAGAGGCACAGGAAAAGGTGTCATTGTCAAAGAGCTCTGTGTCATTCAGCAACATCc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157318 True 2696 lncRNA 0.42 2 37011453 37014185

Neighbor

gene id symbol gene type direction distance location
LOC103021407 LOC108441035,LOC108272207 coding upstream 1263 36993982 ~ 37010190 (+)
apof NA coding upstream 21404 36985932 ~ 36990049 (+)
LOC103039123 LOC108441012,LOC105017220,LOC105897894 coding upstream 39755 36962226 ~ 36971698 (+)
os9 os9,LOC107711069,LOC107582707,LOC107673576,LOC107733587,LOC107585136 coding upstream 49886 36947965 ~ 36961567 (+)
LOC103040047 NA coding upstream 91910 36904618 ~ 36919543 (+)
LOC103046153 eif4b,LOC108441049 coding downstream 27181 37041366 ~ 37050408 (+)
LOC103046872 NA coding downstream 43256 37057441 ~ 37088492 (+)
LOC103044613 NA coding downstream 117389 37131574 ~ 37159320 (+)
LOC103043103 cnga3a,LOC108441138,LOC107585144,LOC107711084,LOC107733584,LOC108271559,LOC106560639 coding downstream 207135 37221320 ~ 37233209 (+)
gabrg3 gabrg3 coding downstream 605851 37620036 ~ 37829531 (+)
G116378 NA non-coding upstream 101804 36909203 ~ 36909649 (+)
G116360 NA non-coding upstream 168215 36840841 ~ 36843238 (+)
G116353 LOC108440955,LOC108272218,LOC107711062,LOC100304745,LOC107585131,LOC107673602,LOC103386112 non-coding upstream 176931 36833489 ~ 36834522 (+)
G116359 NA non-coding upstream 179877 36823464 ~ 36831576 (+)
G116356 LOC103042096,LOC108440962 non-coding upstream 183585 36825294 ~ 36827868 (+)
G116511 NA non-coding downstream 84069 37098254 ~ 37098533 (+)
G116507 NA non-coding downstream 107505 37121690 ~ 37124435 (+)
G116532 LOC108441132,LOC107711082,LOC107585147,LOC107673595,LOC107685285,LOC107733606,LOC107582800 non-coding downstream 176885 37191070 ~ 37199094 (+)
G116539 NA non-coding downstream 238022 37252207 ~ 37252770 (+)
G116536 NA non-coding downstream 251091 37265276 ~ 37273002 (+)
LOC103044253 LOC108440873 other upstream 297569 36657392 ~ 36713884 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 651676 36342985 ~ 36359777 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 1023393 35982119 ~ 35988060 (+)
tomm6 NA other upstream 1043575 35958543 ~ 35967878 (+)
G115931 NA other upstream 1277094 35730379 ~ 35734359 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 85829 37100014 ~ 37121327 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 510666 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 1376092 38390277 ~ 38394530 (+)
G116997 NA other downstream 2344686 39358871 ~ 39359388 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 3785286 40799471 ~ 40808545 (+)

Expression


Co-expression Network