LOC103045245 (vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087)


Basic Information

Item Value
gene id LOC103045245
gene name vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 37100014 ~ 37121327 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU157374
CCAAGCAGAGCTCGCGTGGCCGTGGATGTCACACCAACCAAAACAGCGGACGCACGCGCCGTTCGCCCGTTATTGGCGGAGAGCCGCGCGCGCCAGGCGGGGCCTCGTTACACCGAGCCCCCGTCTATTTAGGTCCCCTCGTCGGCGGAGGAAGAAGCCGTCGTGTGATATCGCTGCTCCGCGCCGCTGAAAGGTTTCACTCGGACTCGGAGGCGTCCATCTCGGCAACGTGGAGAAAGAAAAACTTGGATCAGGCGTCAAGAAAACAAAACGTTAACTAGCGTTAACCAACTCTACctcagagaggagagagaaaatcaCAGTGGAGAAACGGAGGCATGACAAAAACTCAGTGATGGAGTCTACAGTTAGTACATCCACGCAGGTGCTTGATGAATTTGACCGCAATGTTCCACGGATATGTGGTGTATGTGGAGACAAAGCTACTGGCTTCCATTTTAATGCTATGACCTGTGAGGGCTGCAAGGGTTTCTTCagGCGCAGCATGAAGAGGAAGGCCTCCTTTACATGCCCATTTAACGGAAACTGCAGTATTACTAAGGACAACCGCCGCCACTGCCAGGCCTGCAGACTTAAACGCTGtttggatattggcatgatgAAGGAGTTTATCCTGACTGATGAGGAGGTGCAGAGGAAGAAGGATCTTATCCAGAGGAGGAAGGATGAGGAGGCGCAGAGGGAGGCGCAAAAACCCCGCCTGTCTGATGAGCACCACAGGATCATCAGTCTGCTGGTGGAGGCTCATCACAAAACCTACGATGACTCTTACTCTGATTTCTCCCGCTTCCGT
>XM_022675785.1
TGATGGAGTCTACAGTTAGTACATCCACGCAGGTGCTTGATGAATTTGACCGCAATGTTCCACGGATATGTGGTGTATGTGGAGACAAAGCTACTGGCTTCCATTTTAATGCTATGACCTGTGAGGGCTGCAAGGGTTTCTTCagGCGCAGCATGAAGAGGAAGGCCTCCTTTACATGCCCATTTAACGGAAACTGCAGTATTACTAAGGACAACCGCCGCCACTGCCAGGCCTGCAGACTTAAACGCTGtttggatattggcatgatgAAGGAGTTTATCCTGACTGATGAGGAGGTGCAGAGGAAGAAGGATCTTATCCAGAGGAGGAAGGATGAGGAGGCGCAGAGGGAGGCGCAAAAACCCCGCCTGTCTGATGAGCACCACAGGATCATCAGTCTGCTGGTGGAGGCTCATCACAAAACCTACGATGACTCTTACTCTGATTTCTCCCGCTTCCGTcctCCACTCAGATCTGTTGCTATACCGAAGTcatgcattatatatattatgtttattagtGTAGGGGATTTGTTaatgatttctctctctctttctccgtctGCAGAGTCTGGTGACAGTAAGATGAATCTCAGTAACCTGTTGATGATGTATCAGGagcagggctccggcagcccaGAGTCTCCCGAGGACAACAGCTCCCGCCTCTCCATGCTGCCTCACCTGGCTGACCTGGTCAGCTACAGCATCCAGAAGGTTATCGGCTTTGCCAAGATGATCCCTGGATTTAGGGAGCTAAGTGCAGAGGATCAGATAGCTCTGCTGAAGTCCAGTGCTATTGAAGTGATCATGCTGAGGTCAAACCAGTCCTTCAGCCTGGAGGAtatgagctggagctgtggagGGCCAGAGTTTAAGTACTGTGTCAATGATGTCACTAAagCTGGACACACCCTGGAGTTGCTGGAGCCTCTGGTGAAGTTTCAGGTTGGCTTGAAGAAGCTGAATCTGCATGAAGAAGAGCATGTTCTGCTGATGGCTATCTGCCTGCTCTCCCCTGATCGCCCTGGCGTGCAGGATCATGCACGCGTGGAGGCTCTTCAGGACCAACTGTCAGAGATCCTGCAGTCATACATCCGTGTGCACCACTCCGGCGGCCGTCTGCTCTACGCAAAAATGATCCAGAAGCTGGCAGACCTGCGCAGCCTGAACGAGGAGCACTCCAAGCAGTATCGCTCACTCTCCTTCCAACCGGAGCACAGCATGCAGCTCACACCCCTCGTGCTAGAGGTGTTCGGAGGCCAGGTCACCTAGCTACAGCCCCAACTGGCTCACAGGTCATGGGGGGGTCAATAGGCGTGACCCGAAGTGGGTAGTGTTGGAGAAGGTGTGAATGTATGGACAATCACCCtgagaaacacacagagagtgtgtgagggtagggtgtgtgtgtgtgtgagagagagtaaatgagtgagagagagtgtgttttatCATTTACAGCCACATTAGTTACTGTGGTAGGGGATGTGTGGCTGTTTTTAATCGCAGGTTATTGACAGTCTTTAAGTGCCATCGCACAATATGGCACAGATTACCTTtagttttattccataaacacTAGCCAACAGTATTACACtcttgcgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgcgtgtgtaacacagtgtgtgtgagtaagacaAACTTATCCTAAAGCTCTGCTTTGTCCCCAAAGTGCTGTCCACTACTGCTGATTCCTTCTTTTCACCTCCTGCCTTTAAATGCACACGGTCACCAGAGCTAATGCTCCACACAGCACCATTAGCCTAGCCACTGAACCAATCACAAAGCAGCGCCGCCCCCTCTGACCTTCAACGCAGAGCTCTGGTTGGCCGCTAATCTTTTTCTGTCCTCTCCTGTTATGCACCTTGTAGTGACTGAGAAATTACTCTAGGTCTGTGTGGAGTGGCCAGTGCTTTAACAGCAATCGTCGCTAAGCTAATGTGTAAATATGACTATAATCTTTAACTCTGCGTTCTTGGCCTCTATACCTATATTTTCATCTGATCTGAGATCTGTGTATATAAATGACTCTCTCTGTCCTTTAGACTAACTGTGGCTTTTGGAAAGACATGGATGTTCTATAATGGCTGATTTGGTTAATGGCTATACAAATGCACATATGTACTCACAAACCATGAGCTGATTACCTTGTAACCCTCTTGGGTTGGAATTGATGGTGTTTCTTTTAAGGTTTAGCTTAGGTATATCCTTTCTTTTCTACCACTGTCATGGGTACAGTAAATGAAtaggcttttaaaaaaataatccaccATCAGCTTTGCTTGCTCTGAGTAACTTTATTAAGTGATATTAATTCTCTTTCGTTTGTTTTTCCCTATATATCCTCCTGTAATCCCCTGTAGTTATTTTGATTACTCCTAATTGCTGAGAGAACACCCTAAAATGGGCCAACTGTATTTCATTGTAGTGGAGTAGTGTTTCCTAGTCTTAGCCCTGGAGGcaccctgccctgcacattttagttgttCCCCTGCTGCAGCTATGAAAGGTCTTGTTAATGAACTGATAAGCTGAATCTGGTGCGTTGGGAGAAGGGAAAGCCAGAGATGTTTAGAGCGGGGTGCCTCCATGAACAGGTCTAAGAAATGCTGCACTGCAGTGAGGTCAAAGTTCATGATCTCCCCTAATTCTTTACAAAAATGAGAGAATATACTTATAGATTTATGGGCATTGAAGGCCTTCCTCAGTGCTTTTCCCTCCAGTCGCACTATGAGGCTGCTCCTCAAGTGTGCAGAGTTGTTAATTCTCTCTTCACACtcccactgatttttttttcctgcttgtCTCTCGTTGATTTGCTGCTCTAACTCCCCCTAATGGTTAATTATGAGTATTGCTAGTGATTGGGAATTGAAACTATTTACTGTATCATATATAATACTACTTTTATTGCCTATATTTTCTATCATGCAATTTATGGCAATTCCTCTTTTGTAGAATAAGTTATGCCGCTACCATAAATGCTTATTATTAGTTAACGTGTGTGCTCCTGTAAATCATGAAATAAGAGTTAAGTTTGGTCAGTAGTGAGGTAAGGCCATATTTATATGGCACCACACAAAGCATCAAGCCACCACACAGTTTTTGTAACACGCTTGAAGATATGATCCAtccaaaaaactaaacataagTGAATAATGCTTAATACGCATAAGGCAGCAAGTTGTCATCTATGCAGAACATAAAAGCCTCATGCTTGTACTTTAAACCTCTACATCGGTtcgtatttttttataattttttttcagtttatcaaTATCTTGTGCATGTATTTCAAAGTCTAAATCTACACCTTTGCGCTGCTCTGGTAGTGCCTGGGCTCCTCATTTGTCTTTGTGGAGAAAGGCTAGACTCGCTGTGGATGGAAATGTTGCTGAAAGCTCACTGCCGagctccagcaccggctgcACTGGTTCCTTGTGCGTCTGGTGAAGGAAGTGTGTGGTCAAGGTGCCAATGGCAGGCCGAAGCTGCTTGGTCTAGGCTCAGGGTCGATGGCAGAATGTTCTTGTGTGATTTATTATTAGAGCTGTTAGAGTACTGCTTTTGAGAAGGGCTGGGTTTCCGTTGTAGGAACGGTGATATTGCGAAACTACCTGGAGACTGAACTGCATTCAGTAGTGCAGAtgtttgaatgtttgtttgtgtgtgtgtaagcgagTAGTACAGCAGAACTGTAAAGCACTTATGTATTCACTACGTATATTCATATTTCCGTCTGGGCCTGGCATACTCAGCCCTGCCTGGGTTGCTAGTGAATatgtgtgggtttgtgtgtgagtgagagtgtgtgtggg

Function

symbol description
vdrb Enables nuclear receptor activity. Contributes to DNA-binding transcription factor activity and vitamin D response element binding activity. Acts upstream of or within embryonic heart tube morphogenesis and inner ear development. Predicted to be located in cytoplasm and nucleus. Is expressed in several structures, including digestive system; heart; intestinal bulb primordium; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); carcinoma (multiple); lipid storage disease (multiple); melanoma (multiple); and tuberculosis (multiple). Orthologous to human VDR (vitamin D receptor).

NR:

description
PREDICTED: vitamin D3 receptor B isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14035 NR1IN; nuclear receptor subfamily 1 group I

RNA

RNA id representative length rna type GC content exon number start site end site
TU157374 False 814 TUCP 0.53 6 37100014 37111598
XM_022675785.1 True 3854 mRNA 0.46 9 37110659 37121327

Neighbor

gene id symbol gene type direction distance location
LOC103046872 NA coding upstream 11522 37057441 ~ 37088492 (+)
LOC103046153 eif4b,LOC108441049 coding upstream 49606 37041366 ~ 37050408 (+)
LOC103021407 LOC108441035,LOC108272207 coding upstream 89824 36993982 ~ 37010190 (+)
apof NA coding upstream 109965 36985932 ~ 36990049 (+)
LOC103039123 LOC108441012,LOC105017220,LOC105897894 coding upstream 128316 36962226 ~ 36971698 (+)
LOC103044613 NA coding downstream 10247 37131574 ~ 37159320 (+)
LOC103043103 cnga3a,LOC108441138,LOC107585144,LOC107711084,LOC107733584,LOC108271559,LOC106560639 coding downstream 99993 37221320 ~ 37233209 (+)
gabrg3 gabrg3 coding downstream 498709 37620036 ~ 37829531 (+)
nipa1 nipa1 coding downstream 1026615 38147942 ~ 38154159 (+)
nipa2 nipa2,LOC107673599,LOC107582725,LOC107716965 coding downstream 1033772 38155099 ~ 38164964 (+)
G116511 NA non-coding upstream 1481 37098254 ~ 37098533 (+)
G116466 NA non-coding upstream 85829 37011453 ~ 37014185 (+)
G116378 NA non-coding upstream 190365 36909203 ~ 36909649 (+)
G116360 NA non-coding upstream 256776 36840841 ~ 36843238 (+)
G116353 LOC108440955,LOC108272218,LOC107711062,LOC100304745,LOC107585131,LOC107673602,LOC103386112 non-coding upstream 265492 36833489 ~ 36834522 (+)
G116507 NA non-coding downstream 363 37121690 ~ 37124435 (+)
G116532 LOC108441132,LOC107711082,LOC107585147,LOC107673595,LOC107685285,LOC107733606,LOC107582800 non-coding downstream 69743 37191070 ~ 37199094 (+)
G116539 NA non-coding downstream 130880 37252207 ~ 37252770 (+)
G116536 NA non-coding downstream 143949 37265276 ~ 37273002 (+)
G116553 NA non-coding downstream 314921 37436248 ~ 37436492 (+)
LOC103044253 LOC108440873 other upstream 386130 36657392 ~ 36713884 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 740237 36342985 ~ 36359777 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 1111954 35982119 ~ 35988060 (+)
tomm6 NA other upstream 1132136 35958543 ~ 35967878 (+)
G115931 NA other upstream 1365655 35730379 ~ 35734359 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 403524 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 1268950 38390277 ~ 38394530 (+)
G116997 NA other downstream 2237544 39358871 ~ 39359388 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 3678144 40799471 ~ 40808545 (+)
fam183a NA other downstream 4037860 41159187 ~ 41166159 (+)

Expression


Co-expression Network