G116536


Basic Information

Item Value
gene id G116536
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 37265276 ~ 37273002 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU157420
tatacacacacacacacacacacacatatatatatataaatctgaaGCTTTATATGTCACTAAAGCTCATACAACATACAGCTAAAGGACatacaacataaaaacattGCTCATTTCCCTGTGTAGTATAAAGCTTTAGATATATTCTTCTgtagaaagtagaaaaaaaaaagttgtttataaaagtataaaccaaacatgctgcacacacaatactgctgccgccgccgccgtCGCTGCTTTGCTCACGACTCTGAACTTCCCCCAACCTGAGCAGAGCGCTCACACCCAAACAAGGCACTTATTCAGACTTCAGGACAAGGTTCTTGTGTGCTTGCTGTTTTCTGCTTCTCATCTGCTATTTAGACACTGTGCAAAGCTTTTGGTGTGAGAGGAAAAATGCTGGTCTACCCCCAAGAACAGTTTaatgtcagagagagaggggaaaaaatggaaaataaaacaaaacaaacagagaaaaactaaaataatcccAACAAAATGGACAAATGCATCCCATATTTAACAATAAATCAATGAACCGGATCAAGTTGTATTCAGGATTGGAATCTGTGTTGGTTGTCTTTGGGTGTTTTCCAGCACTATTCAGtccagttaaaacagactcCTGGTGCAGACTTCAGAGAAGGTGGTCCCAAACTAAATCCAAAGCGGTTAATTTGTAGTGAGAACATGATCAGACCTTGATCCGACCCgactatcaaatatatatatatatatatcctcatgTTTAggctaaacggctgttcaggtgcagtttaacttgGTTTATTACCCACATAATAACTACAGCTATGAACTAATACAACAACTCCACATTAAACTGCATTGAAATTTGCAATGATCTAGAACACAGGacctttattttgtattttctttcttgctccgcctcagacagctctgaccaataagaGGAGACATCATGCTCACATGGCTTTGTTGTGATGCATTCTGCTGCACTTGCAGGTTTtcttgtgtgaaaacaaaccaaaccaacaggAAAATAATCCAATTTAATCCAAGAACTCgctaactgattcggaccagaaaAACGAACAAAAAGTGTGAAATCACTTTCAAATAATCCAAAACCATTGTAACGGGAAACATCAACAGtacaaaaagtacaaattgAGCAGAGTTTTAATATCTTAACCGTAAACAAAACAGTTCACACTAAGCTAACCACATAATAACTGCATCCCATGCTCGAGAAATGCCACAATTCTCTCGACAGCCGCTTCATAAATCAGGTATTCGGAAAATTTGATAAGACTCATTGACTTACTACACAAACCCCGAGGTTACAAAAGGACAAAAGTGACAAATGATCAGCAGCAATCTCTCATAAAGCATAATTTAGTGTCCAACCGGGGCTCTTTCAGAAGTCACACACGCCCTTGGCTTCTTTTTTCTGCATTACAGGCTGTTTTTTCCTCCTGGATGATGTTATCTAACACAGGCACTTGGGTGAACCTGATGGCTGACCCAGCATTGCACATTGTTACAGGTTTTAAATCACAAGGAATTTCACCGCTCTGCTCGGCCTCGCGTATCAGCTGGCCAAAATAaagcagacagagacagaaatggAATGTTTATATGGAACAGAGTCCTCTATTCCTGCACTGTGCAGGCTTTTTCCTGAGGGCCTGAGGTCATAAACACAGACAACCATTTATATATAGTGCTTCCTGTATTGGCAAGGTATGATGAACAGTAACAGCTCAAGTGGTGATGGATAAActgaaacataataaaacaaacaaacaaacaaacaa
>TU157423
GGGATCTTTAGTCCTGAAAGAAAAGACTGTGTTCAGCACAGCACAAGTgtgagggatagagagagtatggAGACAAGTCCAGAATCATCCTTGTCCAACAGAAGAACCAACACAGCGGGAACAAACACACAACCAGTGGAGAAACAGTGACTTTTTCTGAAGAGGGGCCTTAAAAACAGTGAAGAACAAAACTTTGGAATGTCAGTGAGCTCAATTACAGTACAGTGATCCAGGAACACAGTGACAGTAGTGACACTGTCAACAGGCACATTATGTGAACAAAGTGTACCCAGTGGTTACATGTGCAGGGCCAAATCAGAGTGAGCATTCATTCTGGCTGCTTCCCCTGCAGCTaaacgctacactgaggaatgcAGCTGAGAATTAATTCTATTACAGCATGTGATTCTCTGCAGGCAGGCGAACTGAACTGAAATCTGGCACCAGGGAGGGACTCAACTGAGTGTGTTCATatcaacaaaatgaacaaacaaagaaaataaatacagggAAATGCTCAGaccttttacaaaaaaaaaaaaaaaaaaaaaaaaaaacacttcatttaaaacaaaaagtttattaaacatTGGTTAATGTTAAAACTGTCAAATAGCTCTATATAcattgtatataaaatgtactaTAAGGCAATTGttgtctaaaaatagcattgtgTCCAGTGTTAAGGCATTCGGCAAATTTTACAATACAAGTGCCACTgagagtatacacacacacacacaaacatatatatatatatataaatctgaaGCTTTATATGTCACTAAAGCTCATACAACATACAGCTAAAGGACatacaacataaaaacattGCTCATTTCCCTGTGTAGTATAAAGCTTTAGATATATTCTTCTgtagaaagtagaaaaaaaaaagttgtttataaaagtataaaccaaacatgctgcacacacaatactgctgccgccgccgccgtCGCTGCTTTGCTCACGACTCTGAACTTCCCCCAACCTGAGCAGAGCGCTCACACCCAAACAAGGCACTTATTCAGACTTCAGGACAAGGTTCTTGTGTGCTTGCTGTTTTCTGCTTCTCATCTGCTATTTAGACACTGTGCAAAGCTTTTGGTGTGAGAGGAAAAATGCTGGTCTACCCCCAAGAACAGTTTaatgtcagagagagaggggaaaaaatggaaaataaaacaaaacaaacagagaaaaactaaaataatcccAACAAAATGGACAAATGCATCCCATATTTAACAATAAATCAATGAACCGGATCAAGTTGTATTCAGGATTGGAATCTGTGTTGGTTGTCTTTGGGTGTTTTCCAGCACTATTCAGtccagttaaaacagactcCTGGTGCAGACTTCAGAGAAGGTGGTCCCAAACTAAATCCAAAGCGGTTAATTTGTAGTGAGAACATGATCAGACCTTGATCCGACCCgactatcaaatatatatatatatatatcctcatgTTTAggctaaacggctgttcaggtgcagtttaacttgGTTTATTACCCACATAATAACTACAGCTATGAACTAATACAACAACTCCACATTAAACTGCATTGAAATTTGCAATGATCTAGAACACAGGacctttattttgtattttctttcttgctccgcctcagacagctctgaccaataagaGGAGACATCATGCTCACATGGCTTTGTTGTGATGCATTCTGCTGCACTTGCAGGTTTtcttgtgtgaaaacaaaccaaaccaacaggAAAATAATCCAATTTAATCCAAGAACTCgctaactgattcggaccagaaaAACGAACAAAAAGTGTGAAATCACTTTCAAATAATCCAAAACCATTGTAACGGGAAACATCAACAGtacaaaaagtacaaattgAGCAGAGTTTTAATATCTTAACCGTAAACAAAACAGTTCACACTAAGCTAACCACATAATAACTGCATCCCATGCTCGAGAAATGCCACAATTCTCTCGACAGCCGCTTCATAAATCAGGTATTCGGAAAATTTGATAAGACTCATTGACTTACTACACAAACCCCGAGGTTACAAAAGGACAAAAGTGACAAATGATCAGCAGCAATCTCTCATAAAGCATAATTTAGTGTCCAACCGGGGCTCTTTCAGAAGTCACACACGCCCTTGGCTTCTTTTTTCTGCATTACAGGCTGTTTTTTCCTCCTGGATGATGTTATCTAACACAGGCACTTGGGTGAACCTGATGGCTGACCCAGCATTGCACATTGTTACAGGTTTTAAATCACAAGGAATTTCACCGCTCTGCTCGGCCTCGCGTATCAGCTGGCCAAAATAaagcagacagagacagaaatggAATGTTTATATGGAACAGAGTCCTCTATTCCTGCACTGTGCAGGCTTTTTCCTGAGGGCCTGAGGTCATAAACACAGACAACCATTTATATATAGTGCTTCCTGTATTGGCAAGGTATGATGAACAGTAACAGCTCAAGTGGTGATGGATAAActgaaacataataaaacaaacaaacaaacaaacaaacaaaaataataaagcaaagcTTTCCAGCAGAGACTGACAGAAATCTGCAGATGCTCTAtcagtactgtaaaaaaacaccatCAAGAATTCATCAAACTTAAATGTGTGCTTGTTGCGTCTTTGGTCGAGGACACGGACAATGAGATACAAAACACAGAACggaggcctgtcacgataaccattcattttttttgcgataaataatttattataaaaatataaccaGTTAATTCCATTGATcgaatgataataaaatagcataataatgcaattatacattttaagggataaacctttaatgaataattaatagtttatGAGAGGCCGCACTGGTCATTAATGCACggctagctaaaatactgttgAAATAAACCAACATGGAATTTTTTTGATGCCAGCAAATATATTGCATGATAAATCGCTTAcattattattgtgacaggcctacttgaACAGCATCTAAAACAGGGACAGGGATAACCAGATAAACAGATTGTGGCAGATGCAGAAtggtcagtgtaatgtttattaatttaattttaaggctAAATGAAGAAATAGAAAATTGATGTAAAAACTTAATATTtcgttttttaaatgtagtgcagtgtacaagaaataagttttcatccatttttccaattttagttttttcatctct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157420 False 1802 lncRNA 0.39 2 37265276 37272340
TU157423 True 3192 lncRNA 0.37 2 37267631 37273002

Neighbor

gene id symbol gene type direction distance location
LOC103043103 cnga3a,LOC108441138,LOC107585144,LOC107711084,LOC107733584,LOC108271559,LOC106560639 coding upstream 32067 37221320 ~ 37233209 (+)
LOC103044613 NA coding upstream 105956 37131574 ~ 37159320 (+)
LOC103046872 NA coding upstream 176784 37057441 ~ 37088492 (+)
LOC103046153 eif4b,LOC108441049 coding upstream 214868 37041366 ~ 37050408 (+)
LOC103021407 LOC108441035,LOC108272207 coding upstream 255086 36993982 ~ 37010190 (+)
gabrg3 gabrg3 coding downstream 347034 37620036 ~ 37829531 (+)
nipa1 nipa1 coding downstream 874940 38147942 ~ 38154159 (+)
nipa2 nipa2,LOC107673599,LOC107582725,LOC107716965 coding downstream 882097 38155099 ~ 38164964 (+)
fndc9 fndc9 coding downstream 911323 38184325 ~ 38189931 (+)
chst7 chst7,LOC107582727 coding downstream 974972 38247974 ~ 38262903 (+)
G116539 NA non-coding upstream 12506 37252207 ~ 37252770 (+)
G116532 LOC108441132,LOC107711082,LOC107585147,LOC107673595,LOC107685285,LOC107733606,LOC107582800 non-coding upstream 66182 37191070 ~ 37199094 (+)
G116507 NA non-coding upstream 140841 37121690 ~ 37124435 (+)
G116511 NA non-coding upstream 166743 37098254 ~ 37098533 (+)
G116466 NA non-coding upstream 251091 37011453 ~ 37014185 (+)
G116553 NA non-coding downstream 163246 37436248 ~ 37436492 (+)
G116574 NA non-coding downstream 398834 37671836 ~ 37673086 (+)
G116580 NA non-coding downstream 527215 37800217 ~ 37800754 (+)
LOC111193782 NA non-coding downstream 579641 37852643 ~ 37886735 (+)
G116730 NA non-coding downstream 960472 38233474 ~ 38234081 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other upstream 143949 37100014 ~ 37121327 (+)
LOC103044253 LOC108440873 other upstream 551392 36657392 ~ 36713884 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 905499 36342985 ~ 36359777 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 1277216 35982119 ~ 35988060 (+)
tomm6 NA other upstream 1297398 35958543 ~ 35967878 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 251849 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 1117275 38390277 ~ 38394530 (+)
G116997 NA other downstream 2085869 39358871 ~ 39359388 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 3526469 40799471 ~ 40808545 (+)
fam183a NA other downstream 3886185 41159187 ~ 41166159 (+)

Expression


Co-expression Network