gabra5 (gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289)


Basic Information

Item Value
gene id gabra5
gene name gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 37524851 ~ 37612322 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU157460
CAGCAGTGGGTGAGGAGATCAGAGGTGACACCATTACTAAACACATTGTAACCTATTTACCATAAAAGGACAGAATGTTGCACATGTCTTGTATACATGGCTTAATAATGTGGCCTTTTTACAACATGCAATTTTAGTTGATCAGCTTCTCTTCATTTCATCAAGTGTTACTGGAATGCAAGGTTTGTTGTTGTACCCAATGAGGATTATtaccattaaggattatattttctgtagtaactcataacatggtTAGAATGGATCATCAGATATTGAgaaaacatgctgagttaaagcactaaatattttcttatttgaccTGTGCAGTACGTCACACAAACCTGCCCCTCCAAACCACCATTTCCCCAGTaaccatttccacactcaggggagccaggtatagaacacaacagcatgcaaacagtacacaacagtgcAGCCAGAGAAACGGGTGAGCTGGCTTTTTTTCTGTTGAACAGgtcatcactgagcttcagtaaggttgctaaccacaGCCTAAGCTaggtaatttaccaccaccactagcatAGTAGAGATGGGCATTCTGGAcactgaaatgtatttatttactgatcAGCTGTAGAGTAAGACTTGTGGTCGCTTGCCACTGTTTGTCAAGCTGGCAAAGTGTGTGAGCTTCGTGTTTGGGGAGGAGTGGGTGGGGCAGAAAACTCGATCTATTCTCGCTGGCATTTGTTACTAAACTAAATACAAAATTTCTGACATTTCCTTGAATTTTCTATCACAGGTCATATGCTGttaatttttgtagttttgttttgcttttaatttaatgGAATAATGAAAATGCGCCGAGTAATTgaacaaaaacattttcattcagTAGAAAAAAGGTTTCCATGTTTGGAACATGGAAACCAACACACGCATCTTTGTACAAttgtgtctcttttttttgACATAATTTCACATGCGTAGATGGTTGCAGCTTGTGTGATGCGTCAAATTTAAACCAGATTTCTTAAGTTACGCCGTAGATTCAGCGCAGAAGAAGAAATTGGCCTTTAGTTGATCATAGAACTGTTGTGGCAATCCATAGTACTATCTAGAGTCTTCACATCTTTACATCTTTTTGAtctgaaataaaaagataaagccAGGATGTGAGAGATGTTGGGAGTTGAAAAGCAGTCTAATTGCTGAAACAACAGCACAGAATGATTCAAAATAACCCAAAAAGGAATGGGAAGCATCCTTGTGTTAAAGGTTAAAACAGAACTGAGTAAAAGTAGATCTCTTTCTAtgcaaaaacacttttaaagacGAAGTAAAAGCATCACGATTCGGAGGTGCAAATCCACCTGAAAGTACAAGTACTGTAACTAGTTTCCACCCACCTCTTCCGGTTGCCAAATTACATATTCATGTAGAACGTGCCCTGAacatgaataaaagaaaaagtgtgtgaatGCCCTTGCgagaacaaaagaaagacaaagagagagagaaaaagagagagagagagaaagagggagagaatcGAGTtatggtgtgtgtaagtgatgcTGAAGTGTGATGACACCTCTGCAGGCGCTTGGCAGTGATCCTCAATTGTCTTGAGGGCAGAGACAGCGGGCCATGGCTCAGGGACAGTGTGACAGCGAGTGAGTGAttgagatagagtgaggaaaGTGATGAGGACACACCCTACATTTCAGCACATTCCTGACCGCGTTATAATAAACAGTGCCGTCCCTCCATTAAACCTGACAGTCTGTGTACATCCTGTGGCGCGACATTGCCCCGGAAAGTAAAACCCAGAGCAGTGGGGCAGATGAGTGCAGTTTTGCCACTTCAGGAGGTTCATGAATCACACAGCAATCACTGTGCTCTGACCTCGTAGAACTGAGGTGAGATAGAGCACAATAGAGAAACCAGAGCACCCAAGGCTAGCCACTCTGCAGGTCAGTAGAACTCTGAAAGGCCAGTATCAGCTATCAGCATGCAGCTCAGACAGAAGCTGTAACCACCTGTCAGAAACGGGGAAAGCAAAGATGTGCCAATTTAAAGAAACAGCTCGAAAAGTTGCACAGAACGAGTTGTGTTCTCTATCAGAAGAATGGGTTCTTTCAGAGATGTACAGTTGCCATGTAAAGCATACATATGTCTGAAGCAATAAACTCATGCCT
>XM_022675796.1
GGGGGTCTCCGGTTCTCCAGTTGGAAACAGCATTCAGTTGcgttgcattgcattgcattgcatgagAGGGGAAAGTAAGTGAGGGTGCGTGCATAGGCTACATGCAGTCAGCACACTAGCAAAACTAAcagacacatttatttatatatacaaagaAAAACTGCTCGTGCTACTCCACAGAAGCTGAGCTcgtgctgctactgctgctgccgctgctttTGTGCTGTGTGGGCTCGTAACAGCGCTGCGTTGCAGGAGTGATGGGGAGAAAGGCGCGAGGGGGCTCGTGTGCAGAGAGGTGTGCTCAGTCCTGAGGGCTGAGGGCTAGGATAGAAGGAAAGagggaagaaagaaataaagaaaggaagaaagaaggagaggagCTCTGAGGCTCCACACTACGGGCTCTGCGGCCACCTCTGGAGGAATCCGCTCCGCTCCGCCTCAGGAACGCACGGCTGGCTCAGCTGCACCGGCAGGTATGGGCTATGAGGCACACTGCAGCGCTGCAATGAGAAGTGTGTGGGTCGCTGCCGTCTTCGTCTGCTTCACATGGCGTCTCAGCCTCTGCCAGACCACCACAGGGAGTCCGAACGAGGCCGAGCTAAATGACAACATCACAGTTTTCACACGCATCCTGGACGGGCTGCTGGACGGCTATGATAACAGGCTGCGGCCCGGCCTGGGAGAAAAGGTGACCGAGATTAAGACCAACATCTTTGTCACCAGCTTTGGCCCTGTGTCAGACACCGAGATGGAGTACACAATCGATGTGTTTTTCCGCCAAAGTTGGAAGGACGAGCGTCTGCGCTTTAAGGGACCCATGGGGATGCTGCCTCTGAACAACCTGCTGGCCAGCAACATCTGGACCCCCGACACCTTCTTCTTAAACGGCAAGAAATCCATCGCCCACAACATGACCACGCCCAACAAGCTGCTGAGGCTGCAGGACGACGGCACGCTGCTCTACACTATGAGACTGACCATATCTGCTGAATGTCCAATGCAGCTGGAAGATTTCCCCATGGATGCTCATGCCTGTCCCCTCAAGTTTGGAAGCTATGCCTATCCCATCTCAGAGGTGGTCTACAAGTGGACCCAGGGCCCATCTAAATCTGTGGTTGTGGCAGAGGAAGGCTCCCGTCTGAACCAGTACCACCTGATTGGCCAGACGGCCGGCACCCAGGACATCAGCACCAGCAGAGGTCAATACACAGTGATGATGGCCCACTTCTACCTGAAAAGGAAGATTGGTTATTTTGTCATTCAGACCTACATGCCCTGCTTCATGACGGTCATCCTGTCCCAGGTGTCCTTCTGGCTTAACCGCGAGTCCGTCCCTGCGAGAACGGTCTTCGGTGTGACCACTGTATTGACCATGACCACACTCAGTATCAGTGCCAGAAACTCCCTCCCCAAGGTGGCCTACGCTACAGCTATGGACTGGTTCATCGCTGTGTGCTACGCCTTCGTGTTCTCCGCCCTCATTGAGTTCGCCACAGTCAACTACTTCACCAAACGCAGCTGGGCCTGGGACGGCAAGAAAGCCATGGAGGCTCAACAGCCcaagAAAAAGGATCCACTGGCACTCTCCAAGAAAGCTAACAATGCTTGCTCCACTGGAGTGAACTTCACGGCAAACATCACGAAGGACGCTGCCATTGCCACCATCTCAAACAGCACCTCTGTTCAGATGAAGTGCGCTGAAGCCAAGCCGGCGCTGGACCCCAAAAAAACCTACAACAGCGTCAGCAAGATCGACAAAATGTCCCGGATAGTGTTCCCCGTCCTCTTCGGCACCTTCAACCTGGTCTACTGGGCCACGTACCTCAACAGGGAACCGGTCATCAAAACGAATGTTTGACCAGCATCGCTCTGACATTTCCACCTTTTCCCCCTTCATATCTTCCTCTCTCCATCCTGCCATCCACGACCACCATAAACTGAACCTGCGGGGAGCGAACAGAAACAATGCCAAACATTTATTCACTTCACAGTTTATCCAAGAAACAAACAAGCTTTCCTGTACTCTTTTTTCCTTCTGTTTTCAAAGATTGCATGATTGATTCAAAGCTCTGTGGGAATACTATCGCCATATCTGCCTTGACtttctactgtatattaatCTTCTACTAGGATTTCATAGGTGATGGTTGGTTGCATTTACCTTCTACTCTTATATACTCAACAAAAGCAAGGATTTCACTCATCTCAACTAGTCTCTAAAGTTTTCGACTTTCGAGAAATGATAAGACAAATGCTATTTCGGATTTAGCATCTACATCTATCAGTCTGTCGGTCAGATAAATGTACATAATTACAAGTACAGCAATgccaaatgcaatgcaaaaaaagttgttgtttttttctactgtATCAATGCTTACCTTGAAAACCTTGCTTTGTACAAATGGGCTCGAGGCTTCTAGTGTTTAAGTTTAGCTTGAGCATTTGAAGCAGAGAGCGGCGATGCAAAGCGGACGAATAGCCATGCTAAAAGTGTTGCCTTCGGAGAGACGATACCATACGAGTGCACTGAAATTTCCAGcgattactttttaaaaaacaatcttGAGTCTGACTTTCGTTTTACTCGTCTTTGTTATATAGCTTAAAGCCATTTTAAAGTACAAATGGGCTGACTTGCATCGCGCCCCTTGTGGCAGCTTTTGAATCTTTGCTCTTTAATACTGCAGTATGTGGAGTGAAGGCGGTCGGGTTGCAGTAAAGACTTTCAAATCACTTGTATATAGGCTGTGTATGCTTTGCTTTAACGTTAGCTCTTGGAAGAGCTAAACATTGTGCTACGATGCTACGCTAAAGTGCAGCTAAAGAAACATAAACGTAAGCAGCTAGAAGTCGAGGCTCGGAACTGCGGACCGCGGCGTTGAATTGCGTGGGCTTGAGCTTCGATGGCAGGCTAATGGCATTTCTTTCATGTTGCCACTTTTGCCAGTTCTCTTAGTGTAGGCTTCGCCATGATAATTGAGTTGTTGTTTTTCCTACCTGTACTGATATGAATTGTTTATGAACTTATCTAACATAGAGTAGCTTTCGAcgctttttcttttctgtgtgaTGTGACATGGTCAAAGGCTTGCGGCTTTCTGCGGCAGGACAGAGGGTTTTTTAAGAGGTGTGTGAGGGTTTTTTTGTGCTACCATGGAAACTAATCTACATGGCATTTCAGAGGAATACTTCAGGCAGATTCAGTTTCGGTTAGATCAGCATCAAGCAAGCAAATAGCTAGAGGTGAGGAGAGTCACCTAAAACCATACTCTGCaagtattatttaattaatgagaatttcttttaaaaaatatttcaaaatttcatcccattttctccatTTTCTCCCTGCATGaataggattcgaaccagcaatctcccaattaATGAGAACTTTTACTAGGTACATGTGACCTGCCAAAAAATCAACTTTACTTAAACAAGGAATGATCAGTATCTGCTCATAGAATCCCCTCAAACATTAAAGGCtgatttatacttctgcgttgAATCAGCCTGGTGCATGCGGCATCAGGCTATGCCGTAATTGACAGTGCAGATTAGGCATAACGAGTGAAAATCTCTGCATGTCTGCATATAATAACATTTCATAGGGTCTAGGTTATGTAGCAAGTTCAGTTCTCTTCATTTCATCAAGTGTTACTGGAATGCAAGGTTTGTTGTTGTACCCAATGAGGATTATtaccattaaggattatattttctgtagtaactcataacatggtTAGAATGGATCATCAGATATTGAgaaaacatgctgagttaaagcactaaatattttcttatttgaccTGTGCAGTACGTCACACAAACCTGCCCCTCCAAACCACCATTTCCCCAGTaaccatttccacactcaggggagccaggtatagaacacaacagcatgcaaacagtacacaacagtgcAGCCAGAGAAACGGGTGAGCTGGCTTTTTTTCTGTTGAACAGgtcatcactgagcttcagtaaggttgctaaccacaGCCTAAGCTaggtaatttaccaccaccactagcatAGTAGAGATGGGCATTCTGGAcactgaaatgtatttatttactgatcAGCTGTAGAGTAAGACTTGTGGTCGCTTGCCACTGTTTGTCAAGCTGGCAAAGTGTGTGAGCTTCGTGTTTGGGGAGGAGTGGGTGGGGCAGAAAACTCGATCTATTCTCGCTGGCATTTGTTACTAAACTAAATACAAAATTTCTGACATTTCCTTGAATTTTCTATCACAGGTCATATGCTGttaatttttgtagttttgttttgcttttaatttaatgGAATAATGAAAATGCGCCGAGTAATTgaacaaaaacattttcattcagTAGAAAAAAGGTTTCCATGTTTGGAACATGGAAACCAACACACGCATCTTTGTACAAttgtgtctcttttttttgACATAATTTCACATGCGTAGATGGTTGCAGCTTGTGTGATGCGTCAAATTTAAACCAGATTTCTTAAGTTACGCCGTAGATTCAGCGCAGAAGAAGAAATTGGCCTTTAGTTGATCATAGAACTGTTGTGGCAATCCATAGTACTATCTAGAGTCTTCACATCTTTACATCTTTTTGAtctgaaataaaaagataaagccAGGATGTGAGAGATGTTGGGAGTTGAAAAGCAGTCTAATTGCTGAAACAACAGCACAGAATGATTCAAAATAACCCAAAAAGGAATGGGAAGCATCCTTGTGTTAAAGGTTAAAACAGAACTGAGTAAAAGTAGATCTCTTTCTAtgcaaaaacacttttaaagacGAAGTAAAAGCATCACGATTCGGAGGTGCAAATCCACCTGAAAGTACAAGTACTGTAACTAGTTTCCACCCACCTCTTCCGGTTGCCAAATTACATATTCATGTAGAACGTGCCCTGAacatgaataaaagaaaaagtgtgtgaatGCCCTTGCgagaacaaaagaaagacaaagagagagagaaaaagagagagagagagaaagagggagagaatcGAGTtatggtgtgtgtaagtgatgcTGAAGTGTGATGACACCTCTGCAGGCGCTTGGCAGTGATCCTCAATTGTCTTGAGGGCAGAGACAGCGGGCCATGGCTCAGGGACAGTGTGACAGCGAGTGAGTGAttgagatagagtgaggaaaGTGATGAGGACACACCCTACATTTCAGCACATTCCTGACCGCGTTATAATAAACAGTGCCGTCCCTCCATTAAACCTGACAGTCTGTGTACATCCTGTGGCGCGACATTGCCCCGGAAAGTAAAACCCAGAGCAGTGGGGCAGATGAGTGCAGTTTTGCCACTTCAGGAGGTTCATGAATCACACAGCAATCACTGTGCTCTGACCTCGTAGAACTGAGGTGAGATAGAGCACAATAGAGAAACCAGAGCACCCAAGGCTAGCCACTCTGCAGGTCAGTAGAACTCTGAAAGGCCAGTATCAGCTATCAGCATGCAGCTCAGACAGAAGCTGTAACCACCTGTCAGAAACGGGGAAAGCAAAGATGTGCCAATTTAAAGAAACAGCTCGAAAAGTTGCACAGAACGAGTTGTGTTCTCTATCAGAAGAATGGGTTCTTTCAGAGATGTACAGTTGCCATGTAAAGCATACATATGTCTGAAGCAATAAACTCATGCCTGGTATGTTGCTTGACTGA

Function

symbol description
gabra5 Predicted to enable GABA-gated chloride ion channel activity; inhibitory extracellular ligand-gated ion channel activity; and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to contribute to GABA-A receptor activity; benzodiazepine receptor activity; and chloride channel activity. Predicted to be involved in several processes, including GABAergic synaptic transmission; chloride transmembrane transport; and gamma-aminobutyric acid signaling pathway. Predicted to act upstream of or within chloride transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in dendrite membrane and postsynapse. Predicted to be integral component of plasma membrane. Is expressed in central nervous system. Human ortholog(s) of this gene implicated in bipolar disorder; developmental and epileptic encephalopathy 79; and mental depression. Orthologous to human GABRA5 (gamma-aminobutyric acid type A receptor subunit alpha5).

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit alpha-5

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05175 GABRA; gamma-aminobutyric acid receptor subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
TU157460 False 2171 lncRNA 0.41 2 37606985 37612304
XM_022675796.1 True 5691 mRNA 0.45 10 37524851 37612322

Neighbor

gene id symbol gene type direction distance location
LOC103043103 cnga3a,LOC108441138,LOC107585144,LOC107711084,LOC107733584,LOC108271559,LOC106560639 coding upstream 291642 37221320 ~ 37233209 (+)
LOC103044613 NA coding upstream 365531 37131574 ~ 37159320 (+)
LOC103046872 NA coding upstream 436359 37057441 ~ 37088492 (+)
LOC103046153 eif4b,LOC108441049 coding upstream 474443 37041366 ~ 37050408 (+)
LOC103021407 LOC108441035,LOC108272207 coding upstream 514661 36993982 ~ 37010190 (+)
gabrg3 gabrg3 coding downstream 7714 37620036 ~ 37829531 (+)
nipa1 nipa1 coding downstream 535620 38147942 ~ 38154159 (+)
nipa2 nipa2,LOC107673599,LOC107582725,LOC107716965 coding downstream 542777 38155099 ~ 38164964 (+)
fndc9 fndc9 coding downstream 572003 38184325 ~ 38189931 (+)
chst7 chst7,LOC107582727 coding downstream 635652 38247974 ~ 38262903 (+)
G116553 NA non-coding upstream 88359 37436248 ~ 37436492 (+)
G116536 NA non-coding upstream 251849 37265276 ~ 37273002 (+)
G116539 NA non-coding upstream 272081 37252207 ~ 37252770 (+)
G116532 LOC108441132,LOC107711082,LOC107585147,LOC107673595,LOC107685285,LOC107733606,LOC107582800 non-coding upstream 325757 37191070 ~ 37199094 (+)
G116507 NA non-coding upstream 400416 37121690 ~ 37124435 (+)
G116574 NA non-coding downstream 59514 37671836 ~ 37673086 (+)
G116580 NA non-coding downstream 187895 37800217 ~ 37800754 (+)
LOC111193782 NA non-coding downstream 240321 37852643 ~ 37886735 (+)
G116730 NA non-coding downstream 621152 38233474 ~ 38234081 (+)
G116837 zranb2,LOC107685308,LOC107726518 non-coding downstream 894459 38506781 ~ 38511435 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other upstream 403524 37100014 ~ 37121327 (+)
LOC103044253 LOC108440873 other upstream 810967 36657392 ~ 36713884 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 1165074 36342985 ~ 36359777 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 1536791 35982119 ~ 35988060 (+)
tomm6 NA other upstream 1556973 35958543 ~ 35967878 (+)
LOC103036266 LOC108441345 other downstream 777955 38390277 ~ 38394530 (+)
G116997 NA other downstream 1746549 39358871 ~ 39359388 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 3187149 40799471 ~ 40808545 (+)
fam183a NA other downstream 3546865 41159187 ~ 41166159 (+)
pomgnt1 pomgnt1,LOC102776429 other downstream 3741179 41353501 ~ 41367729 (+)

Expression


Co-expression Network