G116580


Basic Information

Item Value
gene id G116580
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 37800217 ~ 37800754 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU157482
cgccgcgctaccgagagccgccgctccacaagccgccgcgctaccgagagccgccgctccacaagccgccgcgctaccgagagccgccgctcatccagccccggcgctaccgagagccgccgctcatccagccccggagctagcgagagccgccgctccaccagccccggagctaccgagagccgccgctccacaagccgccgcgctaccgagagccgccgctccacaagccccggagctaccgagagccgccgctcatccagccccggagctagcgagagccgccgctccacctgtcccggtgccccgagcagccgctccacctgtcccggtgccccgagcagccgctcagCCAGCCCCGGTgccacgagccgccgctccacctgtcccggtgccgagagcagccgctccacctgtcccggtgccccgagcagccgctcctcctgtcccggtgccccgagcagccgctcctcctgtcccggtgccccgagcagccgctcctcctgtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157482 True 508 lncRNA 0.76 2 37800217 37800754

Neighbor

gene id symbol gene type direction distance location
LOC103043103 cnga3a,LOC108441138,LOC107585144,LOC107711084,LOC107733584,LOC108271559,LOC106560639 coding upstream 567008 37221320 ~ 37233209 (+)
LOC103044613 NA coding upstream 640897 37131574 ~ 37159320 (+)
LOC103046872 NA coding upstream 711725 37057441 ~ 37088492 (+)
LOC103046153 eif4b,LOC108441049 coding upstream 749809 37041366 ~ 37050408 (+)
LOC103021407 LOC108441035,LOC108272207 coding upstream 790027 36993982 ~ 37010190 (+)
nipa1 nipa1 coding downstream 347188 38147942 ~ 38154159 (+)
nipa2 nipa2,LOC107673599,LOC107582725,LOC107716965 coding downstream 354345 38155099 ~ 38164964 (+)
fndc9 fndc9 coding downstream 383571 38184325 ~ 38189931 (+)
chst7 chst7,LOC107582727 coding downstream 447220 38247974 ~ 38262903 (+)
rp2 rp2,LOC107753404,LOC107685300,LOC107711097 coding downstream 547114 38347868 ~ 38355991 (+)
G116574 NA non-coding upstream 127131 37671836 ~ 37673086 (+)
G116553 NA non-coding upstream 363725 37436248 ~ 37436492 (+)
G116536 NA non-coding upstream 527215 37265276 ~ 37273002 (+)
G116539 NA non-coding upstream 547447 37252207 ~ 37252770 (+)
G116532 LOC108441132,LOC107711082,LOC107585147,LOC107673595,LOC107685285,LOC107733606,LOC107582800 non-coding upstream 601123 37191070 ~ 37199094 (+)
LOC111193782 NA non-coding downstream 51889 37852643 ~ 37886735 (+)
G116730 NA non-coding downstream 432720 38233474 ~ 38234081 (+)
G116837 zranb2,LOC107685308,LOC107726518 non-coding downstream 706027 38506781 ~ 38511435 (+)
G116841 NA non-coding downstream 736089 38536843 ~ 38537047 (+)
G116845 NA non-coding downstream 769650 38570404 ~ 38570657 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other upstream 187895 37524851 ~ 37612322 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other upstream 678890 37100014 ~ 37121327 (+)
LOC103044253 LOC108440873 other upstream 1086333 36657392 ~ 36713884 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 1440440 36342985 ~ 36359777 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 1812157 35982119 ~ 35988060 (+)
LOC103036266 LOC108441345 other downstream 589523 38390277 ~ 38394530 (+)
G116997 NA other downstream 1558117 39358871 ~ 39359388 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 2998717 40799471 ~ 40808545 (+)
fam183a NA other downstream 3358433 41159187 ~ 41166159 (+)
pomgnt1 pomgnt1,LOC102776429 other downstream 3552747 41353501 ~ 41367729 (+)

Expression


Co-expression Network