G116581 (eif4b,LOC108441049)


Basic Information

Item Value
gene id G116581
gene name eif4b,LOC108441049
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 37041361 ~ 37045788 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU157486
TACAATCATTAATCAGCATGTTGTCAACTCACCGATCTCGTGGCCTTCTCTCTGAAGGTCTGCCTTTGTCATCATCTAGCTGTCTCTGCAGTCGATCCTGTTCCTTCTTCAGCCTCTCCTCCACTTCTCGCTCCTTGGCAGCAGTGTCTACAGGTTTGGCGGCTCCAAAAATGGAGGCAGACCGGCCACCAGCACTGGTGGTACTGGTTTGGGGGGAGGTGCCCCCACTTTGCTCCTCATCTTTTGGGATGGTGCGAGGTTTCAAGTTCAGTTTGGGTCTTTGTAGCGGGGCTCTCTCCTCACGCCTGTCATCCCGTCTCTCGTACCGGTCTTCATCTCGCTTGTCGTCGTAGTCACGCCTAAAGCCACTACCAAATGCTCGCTGGCCTCCACCACGAGAGTCAaatcCTCCACGTTCGTAGTCTCTGCTGCCTCGGTCATCATAACGATCCCTGCGATCCCTGTCGCCATAGCGGTCCCGGTCGCCAAACCGGTCCCTGCGATCCCGGTCATCATACCGATCTCTGCCGCCATAGCGATCATCACGCCATGGGCCATCTCTGTTCCGATCTGACTTTTCTCCATAGTCGTCATCTCTACGAGGCCCATCATCCTGGTCTGCACTGGGTCTAGCTCTCCAATCAGAATCTGTCTTATCAGGACCAAGGTCCATTCCACGGCCCCGATCTCGTCCTGACATCATACCACTATCCCTCTCTTTGTCATTGGACTGATCCGCAATATCTACTCGAATCCGTCTGTTCCCAAGGTTCTCCTCATTCAGAGTGAGAGCCTGAAGAAGGGACTCAACGTCATCAAACTCAGCATAGCCAAATCCCTTCAGCCTCTCCGGGTTATTGGGCTCTCTTGGCAAACGCACTGCACTGATCGCCAGGCCTCTAAAGAAATCCTTGATGGACTCTTCACTGACGTCATAGGGGAGGTTACCAAGGAAGGCAGTGTAGGGTGGGCTGCGGGGCAGACGTGAACGGTCAACGTTTGGCTCCCTGGCTGCACGAGGAGCAGTTGGCAAGAGTGAACGATCAATGGGCGGAGCACGATATGAGTCTTCCTCTGTGTGCCAGGAGGTAGACACTTCCCCTTCAAAGTCATCGGTCTCATCTGCCCAACTGGTTGGCTTTGTTGGCGGGTAATATTGTGGTGTCGAACCTTTACTGTCTTCCGCAAGGAAGTCAGTAAGAGTTAGAGTCTTGcccttcttattcttcttcttagCTGATGCCGCCATGTTGGAAACTGTGTACGTCGCCGAGACCCGGATGAAAGCGTCACTATGGCGCGTGGCATGGGGGGGCTGGAGCGCGCGCATCATTTC

Function

symbol description
eif4b Enables RNA binding activity. Predicted to be involved in eukaryotic translation initiation factor 4F complex assembly and formation of translation preinitiation complex. Located in cytosol. Biomarker of autism spectrum disorder and major depressive disorder.

NR:

description
PREDICTED: eukaryotic translation initiation factor 4B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157486 True 1336 TUCP 0.54 9 37041361 37045788

Neighbor

gene id symbol gene type direction distance location
LOC103047373 NA coding downstream 3986 37031892 ~ 37037375 (-)
gpr84 NA coding downstream 24700 37012440 ~ 37016661 (-)
b4galnt1 b4galnt1,b4galnt1b,LOC107673615,LOC107667298,LOC107711068 coding downstream 100738 36923290 ~ 36940623 (-)
LOC103040574 LOC108440011 coding downstream 139213 36895859 ~ 36902148 (-)
LOC103041181 NA coding downstream 149109 36882810 ~ 36892252 (-)
trnaq-uug_2 NA coding upstream 47211 37092999 ~ 37093070 (-)
LOC103044934 slc48a1,LOC103044934,LOC108441111,LOC107733581,LOC107585148,LOC107685336,LOC107711080 coding upstream 114120 37159908 ~ 37166924 (-)
LOC103043928 LOC107100807 coding upstream 122393 37168181 ~ 37179555 (-)
LOC103043620 stk35l,LOC108441132,LOC107711082,LOC107673595,LOC107585147,LOC105016730 coding upstream 145242 37191030 ~ 37202861 (-)
ube3a ube3a,LOC107711083,LOC107582722 coding upstream 189836 37235624 ~ 37244239 (-)
LOC111193780 NA non-coding downstream 14192 37026078 ~ 37027169 (-)
G116475 os9,LOC107711069 non-coding downstream 31187 36953790 ~ 37010174 (-)
G116495 NA non-coding downstream 35427 37004296 ~ 37005934 (-)
G116492 NA non-coding downstream 43608 36996894 ~ 36997753 (-)
G116483 NA non-coding downstream 69647 36964532 ~ 36971714 (-)
G116587 NA non-coding upstream 27644 37073432 ~ 37090489 (-)
G116594 NA non-coding upstream 49157 37094945 ~ 37095153 (-)
G116595 NA non-coding upstream 50970 37096758 ~ 37096995 (-)
G116584 vdrb,LOC108441087,LOC107585146,LOC107711077 non-coding upstream 72712 37118500 ~ 37121310 (-)
G116585 NA non-coding upstream 75629 37121417 ~ 37124432 (-)
LOC103023810 NA other downstream 9998 37022175 ~ 37031363 (-)
LOC103028059 ghrl other downstream 979077 36056563 ~ 36062284 (-)
LOC103031109 uqcc2,cf125,LOC108440614,LOC107580205,LOC107667355,LOC106565356 other downstream 1082543 35955109 ~ 35958818 (-)
LOC103034399 LOC108440553,LOC108271943,LOC107584416,LOC107721179 other downstream 1161070 35869803 ~ 35880291 (-)
G116068 myhz2,LOC108440470,LOC108443907,LOC107385141 other downstream 1226039 35813621 ~ 35815322 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other upstream 1187686 38233474 ~ 38248624 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other upstream 1335482 38381270 ~ 38384598 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other upstream 1584849 38630637 ~ 38899446 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other upstream 1907374 38953162 ~ 38963694 (-)
LOC103028549 NA other upstream 2238429 39284217 ~ 39291028 (-)

Expression


Co-expression Network