G116585


Basic Information

Item Value
gene id G116585
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 37121417 ~ 37124432 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU157496
ttatttattgtttgattTGTAAAACATTAGACAAACATTACATGAAATCAAAGACATGAATTTACAATACTTAATgctgaaagaaaaagagggaatGAAAACCTTTAAACTGTTGAAATATATTCATGGCAAACAACTGTTAAATTGTGAGCAGAGATGGCGTCTTTACAACAGTTCACTTTGCGATACCTAATCACTCAGGCACAGTGAAAAGCTCTTCTAACGTTTGTTTCAAACAGTTTACCGCCACAAATATTCGGTACGGACCCTGTGCTTACGGTAGCCCATGAGGGTCAGACAGAAGAGAGGAAATATAAAGAGAGTGAGTCTTCTCCCCTTCTAGACGTGAATGTGTCACTTTTCCTTTAACATGATCTGAGCTGAGACATGGACACTTTAGCAGCTGCATTTgagttgtgagagtgtgtgtgggtgcatgtgtatgtatgtatacatatgtatgcatgtgtgatataaatgctttttattCTGAGGTGGTTCTGGTAAGAAGTACTGAGGAGTTTGCGTATTTGTAAATGAGTCCCGTATATTGAGAGGTCCAGTCACAGCAAACAGAACAAACAGTTAGCACATCAGTGAGCACATCACTGCTAAAGGGGAAACTGAGGGAGACTCGGAGGTGATTATGTTTATTTcttgtaaatgtttttgtttgtttttttgttttttttttgtggagcaGCAAAATCCAACTGAGCAGTCAGAATCAAGACGGGATGGGGCCTGAGGAAGGCCAACCAATCCCAGCAGCTACTGAACACTGTCAGTCACAGGAGTGACCACACCTACAACAGCTTTCAGCATTCTCTagtatagtatgtgtgtgtgtacgtgtatgtacgtgtgtgtgtgtgtgtgtttgtgtgtatgtgcatgtatgtgtgtggagAATGTGCTTGAAGAGAAAGCTGaggataaaaaacactgtacacaaagataaaaaaagagccATTATGTTAAGGCGGATCTGTTGCGTTGTGTGAAATTCATAAATTCTGAGGTACTGAGTCATCCATGTGAGCCACTGCAtggcaataaatacaaacacgaatcataaaaaaataaaaaattaaatgtgtcTGTAGCCCTGTGAGGTAGTTTGTTACGGTTACATTTtggactcaaaaaaaaaaaaaaagaaaaaagaaaagaaaaaagtaatacgagaaaaaaaggtaaaagaccAACATCAACATCATCCTCTTTCCATTAACATCATCATCAttgacatcatcatcatcatcttcatcaagGGTAGTGTACTATTATTGTTGATACTGTTGCAGCTGTCATCTTGGTTTGGATTTGTACAATACAGTTAGATGCTGGTGTAGCGGCCCAACCTATTTCCACCATCATCACAAAACCAGACAGAACACAGAAATCCTTTCATTCAACTTTCCCTGTCAAATTCTATCATCCTGCTGAAACATTAAACTGAAAGGCTTTGTCATTTCTCCAGTTTGAAATTGagtgaaaacataaaaattacaCAGAAATGAGCAGCTTTTTAGATGAAGAAaacaagacagaaagagaaagaaaatatatgagTTTTCCTTAACCTGTGTTAGCTAGAGGGGGTTACAATAAAGCTAGACCTCCCAATTTCCTATATCACTGCATATCTACAAATACACACCcactcaaccacacacacacacacacataccaacaCACTTATCTGCCATTCTATGCCTTCAAAGCCTTCAAAAATCGGACTACTGAAACTATTAATAAAGGTGCATGTGGCGATGCAGAGGTTCAGAAGTACACTCTGCAGTATAGAATCAGGTTTAAGTTCTAGTTGTGTCCTGTGCCTTTGATGGATGGGAGCATTCTCCTTATAACAGAGAACAGGATAACAGGACAATTGATGCTGTACGCTAAATGTATACGAAACAccgattttatatatatatatatatatatatatttcactcaatgtgtgtgtgtgtgtgtggtataatcATAATTGGTAGAGCTGAGTATTCaaaaaatttaaagtaaatttttattaataataaaatcatctGCTGTAAATATAAGGCAGATAAAGGGCAGATATGGCAGACAAAATAATTCCACTATCCTTTACCAACAATCGATAGGGCAAATATCTCTTTTACTAATGGCTTTTCaattttcaaatatttacacttttaatttttgGAAAATTCTGCTGTAGCCCTACATTGTACAGTGCCACGTAATCAGTGGATCTCTCTATTAGCcttatatagctatatagcaaTATTTAAGTGTATTAACCTGACAAAGCCATTCAACAGTGTAAGTGACAAAACTTTTGTTAGTGTTTCGTATACAATTTAGACACAGCATGTGTCTCTTTCATTTGCATCACCATATGACATACCAGTCAGTAGAGTATCTACATGCTTGTGGTAAAGCTAAGCACAGAGCATTCTCCTCCAAGTGCACGGAGGTATTCTGCATGCTACATGGCCAGTAGTCTGAGACGGTTGTGTAGTCAGGCATCATATATGTTTGAGGAGGCGCATGCAGGGCATGCTCTTAAAGACTGGTACTGATGCTGAAGAAAGAGTCTTCTGGTGGGACAAATATTTGTGCAGGGGCTTTAACTAATttaagagacaaaaataaagggggaaataaataaagcaatgtcCAAAAAAGCTTCTTTCAAAATAACATTCATagatatacaggtgctggtcaacgaattagaataatttgaaatggtttctccattattccaattcaataaaacaacagtgtcacagttaaatggcctaaatgggccttttggaaagctcagctgagcaaatttttttccaggtaacgagttctgtgattagtctaacgagtaggacaggtgcggtgaacacctgatttgctttctgcacaaaaaatgcattcaaagaatttcatgattgcactatttcaaattattctaattcgttgaccagcacctgtatatgaataaaattgaattttaaGTGCCATGACTAAG

Function

NR:

description
E3 ubiquitin-protein ligase RBBP6 isoform 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157496 True 3016 lncRNA 0.37 1 37121417 37124432

Neighbor

gene id symbol gene type direction distance location
trnaq-uug_2 NA coding downstream 28347 37092999 ~ 37093070 (-)
LOC103047373 NA coding downstream 84042 37031892 ~ 37037375 (-)
gpr84 NA coding downstream 104756 37012440 ~ 37016661 (-)
b4galnt1 b4galnt1,b4galnt1b,LOC107673615,LOC107667298,LOC107711068 coding downstream 180794 36923290 ~ 36940623 (-)
LOC103040574 LOC108440011 coding downstream 219269 36895859 ~ 36902148 (-)
LOC103044934 slc48a1,LOC103044934,LOC108441111,LOC107733581,LOC107585148,LOC107685336,LOC107711080 coding upstream 35476 37159908 ~ 37166924 (-)
LOC103043928 LOC107100807 coding upstream 43749 37168181 ~ 37179555 (-)
LOC103043620 stk35l,LOC108441132,LOC107711082,LOC107673595,LOC107585147,LOC105016730 coding upstream 66598 37191030 ~ 37202861 (-)
ube3a ube3a,LOC107711083,LOC107582722 coding upstream 111192 37235624 ~ 37244239 (-)
atp10a atp10a,LOC107733604,LOC107711085,LOC107673579,LOC107685287 coding upstream 149891 37274323 ~ 37354392 (-)
G116584 vdrb,LOC108441087,LOC107585146,LOC107711077 non-coding downstream 107 37118500 ~ 37121310 (-)
G116595 NA non-coding downstream 24422 37096758 ~ 37096995 (-)
G116594 NA non-coding downstream 26264 37094945 ~ 37095153 (-)
G116587 NA non-coding downstream 30928 37073432 ~ 37090489 (-)
LOC111193780 NA non-coding downstream 94248 37026078 ~ 37027169 (-)
G116613 NA non-coding upstream 20964 37145396 ~ 37151238 (-)
G116629 NA non-coding upstream 127784 37252216 ~ 37252761 (-)
G116636 NA non-coding upstream 311451 37435883 ~ 37436186 (-)
LOC111193781 NA non-coding upstream 373931 37498363 ~ 37500196 (-)
G116646 gabra5,LOC107673539,LOC107711088 non-coding upstream 476392 37600824 ~ 37612287 (-)
G116581 eif4b,LOC108441049 other downstream 75629 37041361 ~ 37045788 (-)
LOC103023810 NA other downstream 90054 37022175 ~ 37031363 (-)
LOC103028059 ghrl other downstream 1059133 36056563 ~ 36062284 (-)
LOC103031109 uqcc2,cf125,LOC108440614,LOC107580205,LOC107667355,LOC106565356 other downstream 1162599 35955109 ~ 35958818 (-)
LOC103034399 LOC108440553,LOC108271943,LOC107584416,LOC107721179 other downstream 1241126 35869803 ~ 35880291 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other upstream 1109042 38233474 ~ 38248624 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other upstream 1256838 38381270 ~ 38384598 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other upstream 1506205 38630637 ~ 38899446 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other upstream 1828730 38953162 ~ 38963694 (-)
LOC103028549 NA other upstream 2159785 39284217 ~ 39291028 (-)

Expression


Co-expression Network