G116646 (gabra5,LOC107673539,LOC107711088)


Basic Information

Item Value
gene id G116646
gene name gabra5,LOC107673539,LOC107711088
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 37600824 ~ 37612287 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU157572
TTCAGACATATGTATGCTTTACATGGCAACTGTACATCTCTGAAAGAACCCATTCTTCTGATAGAGAACACAACTCGTTCTGTGCAACTTTTCGAGCTGTTTCTTTAAATTGGCACATCTTTGCTTTCCCCGTTTCTGACAGGTGGTTACAGCTTCTGTCTGAGCTGCATGCTGATAGCTGATACTGGCCTTTCAGAGTTCTACTGACCTGCAGAGTGGCTAGCCTTGGGTGCTCTGGTTTCTCTATTGTGCTCTATCTCACCTCAGTTCTACGAGGTCAGAGCACAGTGATTGCTGTGTGATTCATGAACCTCCTGAAGTGGCAAAACTGCACTCATCTGCCCCACTGCTCTGGGTTTTACTTTCCGGGGCAATGTCGCGCCACAGGATGTACACAGACTGTCAGGTTTAATGGAGGGACGGCACTGTTTATTATAACGCGGTCAGGAATGTGCTGAAATGTAGGGTGTGTCCTCATCACtttcctcactctatctcaaTCACTCACTCGCTGTCACACTGTCCCTGAGCCATGGCCCGCTGTCTCTGCCCTCAAGACAATTGAGGATCACTGCCAAGCGCCTGCAGAGGTGTCATCACACTTCAgcatcacttacacacaccataACTCgattctctccctctttctctctctctctctttttctctctctctttgtctttcttttgttctcGCAAGGGCattcacacactttttcttttattcatgtTCAGGGCACGTTCTACATGAATATGTAATTTGGCAACCGGAAGAGGTGGGTGGAAACTAGTTACAGTACTTGTACTTTCAGGTGGATTTGCACCTCCGAATCGTGATGCTTTTACTTCgtctttaaaagtgtttttgcaTAGAAAGAGATCTACTTTTACTCAGTTCTGTTTTAACCTTTAACACAAGGATGCTTCCCATTCCTTTTTGGGTTATTTTGAATCATTCTGTGCTGTTGTTTCAGCAATTAGACTGCTTTTCAACTCCCAACATCTCTCACATCCTggctttatctttttatttcagaTCAAAAAGATGTAAAGATGTGAAGACTCTAGATAGTACTATGGATTGCCACAACAGTTCTATGATCAACTAAAGGCCAATTTCTTCTTCTGCGCTGAATCTACGGCGTAACTTAAGAAATCTGGTTTAAATTTGACGCATCACACAAGCTGCAACCATCTACGCATGTGAAATTATGTcaaaaaaaagagacacaaTTGTACAAAGATGCGTGTGTTGGTTTCCATGTTCCAAACATGGAAACCTTTTTTCTActgaatgaaaatgtttttgttcAATTACTCGGCGCATTTTCATTATTCcattaaattaaaagcaaaacaaaactacaaaaattaaCAGCATATGACCTGTGATAGAAAATTCAAGGAAATGTCAGAAATTTTGTATTTAGTTTAGTAACAAATGCCAGCGAGAATAGATCGAGTTTTCTGCCCCACCCACTCCTCCCCAAACACGAAGCTCACACACTTTGCCAGCTTGACAAACAGTGGCAAGCGACCACAAGTCTTACTCTACAGCTgatcagtaaataaatacatttcagtgTCCAGAATGCCCATCTCTACTatgctagtggtggtggtaaattacctAGCTTAGGCtgtggttagcaaccttactgaagctcagtgatgacCTGTTCAACAGAAAAAAAGCCAGCTCACCCGTTTCTCTGGCTgcactgttgtgtactgtttgcatgctgttgtgttctatacctggctcccctgagtgtggaaatggttACTGGGGAAATGGTGGTTTGGAGGGGCAGGTTTGTGTGACGTACTGCACAggtcaaataagaaaatatttagtgctttaactcagcatgttttcTCAATATCTGATGATCCATTCTAaccatgttatgagttactacagaaaatataatccttaatggtaATAATCCTCATTGGGTACAACAACAAACCTTGCATTCCAGTAACACTTGATGAAATGAAGAGAACTGAACTTGCTACATAACCTAGACCCTATGAAATGTTATTATATGCAGACATGCAGAGATTTTCACTCGTTATGCCTAATCTGCACTGTCAATTACGGCATAGCCTGATGCCGCATGCACCAGGCTGATTcaacgcagaagtataaatcaGCCTTTAATGTTTGAGGGGATTCTATGAGCAGATACTGATCATTCCTTGTTTAAGTAAAGTTGATTTTTTGGCAGGTCACATGTACCTAGTAAAAGTTCTCATtaattgggagattgctggttcgaatcctattCATGCAGGGAGAAAatggagaaaatgggatgaaattttgaaatattttttaaaagaaattctcattaattaaataatacttGCAGAGTATGGTTTTAGGTGACTCTCCTCACCTCTAGCTATTTGCTTGCTTGATGCTGATCTAACCGAAACTGAATCTGCCTGAAGTATTCCTCTGAAATGCCATGTAGATTAGTTTCCATGGTAGCACAAAAAAACCCTCACACACCTCTTAAAAAACCCTCTGTCCTGCCGCAGAAAGCCGCAAGCCTTTGACCATGTCACAtcacacagaaaagaaaaagcgTCGAAAGCTACTCTATGTTAGATAAGTTCATAAACAATTCATATCAGTACAGGTAGGAAAAACAACAACTCAATTATCATGGCGAAGCCTACACTAAGAGAACTGGCAAAAGTGGCAACATGAAAGAAATGCCATTAGCCTGCCATCGAAGCTCAAGCCCACGCAATTCAACGCCGCGGTCCGCAGTTCCGAGCCTCGACTTCTAGCTGCTTACGTTTATGTTTCTTTAGCTGCACTTTAGCGTAGCATCGTAGCACAATGTTTAGCTCTTCCAAGAGCTAACGTTAAAGCAAAGCATACACAGCCTATATACAAGTGATTTGAAAGTCTTTACTGCAACCCGACCGCCTTCACTCCACATACTGCAGTATTAAAGAGCAAAGATTCAAAAGCTGCCACAAGGGGCGCGATGCAAGTCAGCCCATTTGTACTTTAAAATGGCTTTAAGCTATATAACAAAGACGAGTAAAACGAAAGTCAGACTCaagattgttttttaaaaagtaatcgCTGGAAATTTCAGTGCACTCGTATGGTATCGTCTCTCCGAAGGCAACACTTTTAGCATGGCTATTCGTCCGCTTTGCATCGCCGCTCTCTGCTTCAAATGCTCAAGCTAAACTTAAACACTAGAAGCCTCGAGCCCATTTGTACAAAGCAAGGTTTTCAAGGTAAGCATTGATacagtagaaaaaaacaacaactttttttgcattgcatttggcATTGCTGTACTTGTAATTATGTACATTTATCTGACCGACAGACTGATAGATGTAGATGCTAAATCCGAAATAGCATTTGTCTTATCATTTCTCGAAAGTCGAAAACTTTAGAGACTAGTTGAGATGAGTGAAATCCTTGCTTTTGTTGAGTATATAAGAGTAGAAGGTAAATGCAACCAACCATCACCTATGAAATCCTAGTAGAAGattaatatacagtagaaaGTCAAGGCAGATATGGCGATAGTATTCCCACAGAGCTTTGAATCAATCATGCAATCTTTGAAAACAGAAGGAAAAAAGAGTACAGGAAAGCTTGTTTGTTTCTTGGATAAACTGTGAAGTGAATAAATGTTTGGCATTGTTTCTGTTCGCTCCCCGCAGGTTCAGTTTATGGTGGTCGTGGATGGCAGGATGGAGAGAGGAAGATATGAAGGGGGAAAAGGTGGAAATGTCAGAGCGATGCTGGTCAAACATTCGTTTTGATGACCGGTTCCCTGTTGAGGTACGTGGCCCAGTAGACCAGGTTGAAGGTGCCGAAGAGGACGGGGAACACTATCCGGGACATTTTGTCGATCTTGCTGACGCTGTTGTAGGTTTTTTTGGGGTCCAGCGCCGGCTTGGCTTCAGCGCACTTCATCTGAACAGAGGTGCTGTTTGAGATGGTGGCAATGGCAGCGTCCTTCGTGATGTTTGCCGTGAAGTTCACTCCAGTGGAGCAAGCATTGTTAGCTTTCTTGGAGAGTGCCAGTGGATCCTTTTTCcttgGGCTGTTGAGCCTCCATGGCTTTCTTGCCGTCCCAGGCCCAGCTGCGTTTGGTGAAGTAGTTGACTGTGGCGAACTCAATGAGGGCGGAGAACACGAAGGCGTAGCACACAGCGATGAACCAGTCCATAGCTGTAGCGTAGGCCACCTTGGGGAGGGAGTTTCTGGCACTGATACTGAGTGTGGTCATGGTCAATACAGTGGTCAC

Function

symbol description
gabra5 Predicted to enable GABA-gated chloride ion channel activity; inhibitory extracellular ligand-gated ion channel activity; and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to contribute to GABA-A receptor activity; benzodiazepine receptor activity; and chloride channel activity. Predicted to be involved in several processes, including GABAergic synaptic transmission; chloride transmembrane transport; and gamma-aminobutyric acid signaling pathway. Predicted to act upstream of or within chloride transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in dendrite membrane and postsynapse. Predicted to be integral component of plasma membrane. Is expressed in central nervous system. Human ortholog(s) of this gene implicated in bipolar disorder; developmental and epileptic encephalopathy 79; and mental depression. Orthologous to human GABRA5 (gamma-aminobutyric acid type A receptor subunit alpha5).

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit alpha-5 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157572 True 4297 lncRNA 0.42 2 37600824 37612287

Neighbor

gene id symbol gene type direction distance location
gabrb3 gabrb3,LOC107673538,LOC107711086,LOC107585149,LOC107685288,LOC107582723,LOC107733605 coding downstream 4652 37442908 ~ 37596172 (-)
atp10a atp10a,LOC107733604,LOC107711085,LOC107673579,LOC107685287 coding downstream 246432 37274323 ~ 37354392 (-)
ube3a ube3a,LOC107711083,LOC107582722 coding downstream 356585 37235624 ~ 37244239 (-)
LOC103043620 stk35l,LOC108441132,LOC107711082,LOC107673595,LOC107585147,LOC105016730 coding downstream 397963 37191030 ~ 37202861 (-)
LOC103043928 LOC107100807 coding downstream 421269 37168181 ~ 37179555 (-)
oca2 oca2,LOC107716962 coding upstream 292348 37904635 ~ 38048888 (-)
herc2 herc2 coding upstream 446640 38058927 ~ 38146623 (-)
LOC103039807 cyfip1,LOC107673532,LOC107716963,LOC107685293 coding upstream 552675 38164962 ~ 38232552 (-)
slc9a7 slc9a7,LOC107673530,LOC107711095,LOC107753405,LOC107685298 coding upstream 650834 38263121 ~ 38340842 (-)
gtpbp6 gtpbp6,LOC104953295 coding upstream 783579 38395866 ~ 38402553 (-)
LOC111193781 NA non-coding downstream 100628 37498363 ~ 37500196 (-)
G116636 NA non-coding downstream 164638 37435883 ~ 37436186 (-)
G116629 NA non-coding downstream 348063 37252216 ~ 37252761 (-)
G116613 NA non-coding downstream 449586 37145396 ~ 37151238 (-)
G116585 NA non-coding downstream 476392 37121417 ~ 37124432 (-)
G116653 NA non-coding upstream 28206 37640493 ~ 37759160 (-)
G116754 NA non-coding upstream 341509 37953796 ~ 37960611 (-)
G116794 NA non-coding upstream 742704 38354991 ~ 38357368 (-)
G116908 NA non-coding upstream 821052 38433339 ~ 38434506 (-)
G116910 NA non-coding upstream 873763 38486050 ~ 38487112 (-)
G116581 eif4b,LOC108441049 other downstream 555036 37041361 ~ 37045788 (-)
LOC103023810 NA other downstream 569461 37022175 ~ 37031363 (-)
LOC103028059 ghrl other downstream 1538540 36056563 ~ 36062284 (-)
LOC103031109 uqcc2,cf125,LOC108440614,LOC107580205,LOC107667355,LOC106565356 other downstream 1642006 35955109 ~ 35958818 (-)
LOC103034399 LOC108440553,LOC108271943,LOC107584416,LOC107721179 other downstream 1720533 35869803 ~ 35880291 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other upstream 621187 38233474 ~ 38248624 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other upstream 768983 38381270 ~ 38384598 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other upstream 1018350 38630637 ~ 38899446 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other upstream 1340875 38953162 ~ 38963694 (-)
LOC103028549 NA other upstream 1671930 39284217 ~ 39291028 (-)

Expression


Co-expression Network