tubgcp5 (tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727)


Basic Information

Item Value
gene id tubgcp5
gene name tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 38233474 ~ 38248624 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU157747
cGGCAAGAAGGAGAAACGGGCTGAACTGAATGAGCAGCGAATCAGTTCACTAAATCGAGACTGAACTGCGACAGGATTATTATAGCAAGCACTGAGTAAAGGGGGGAAATAACCGCAGCACCTGTGAATACTGTGAGGGGAGGACCTGCTCGCTGAGCTCGCTGGGTTAGATAGCCTGCTAGGTCTTAGCTGTATGACTGAAACCGCCGTTATGATGATGCTAAGCGGTtggctagctaacttagctaacgaTAGTAAGCAAGGTTCACGCTGTTAAAATGAACGTAGTGAAAACCTACAGAATCAGCTCAGCTAGACCTGTGAAGCCAGAATGGCAGTAGGAAGAGATATAAGagtaatttaaaattttaaaatcgTATTTACAAttggctagttagctaacttagctaagtGTCTGCAGGATGGCTCACTGGACCAAATTTGAGAAGGAGCTGGAGCAGGAGGTGAAGAGACTGATAGCACACATGACTGGCATTCAAGATGAAGAGGACCAAAACTTCCAAATGGCTCTCAAATTCGCCTGGTCAAATTTCAAGTTTCACCGTTTCCTGGATGTCAGCAGCCACAATGTGCAGCGCTCAATAAATGGGTGAGAATAAgattgtgtttaatttaattaaaacataacacAAAATGTAAGGAGATTTGTGTTTGGAAGATTAtttcttaagccctatccggacgcgTTTAATAACATAGCTATTTGTCATGTTGGGCGCACGTTTCCACGTTTCCACACAACAGCgaatggaaatggaggagctgctgaacgcgatgtcatgtgactgcaAAAGTctccaaaaaactcactggtcctcctgttttttcaatttcacTCCAGATGCAGAGGTTTTACCACTAAGTGAA
>TU157749
CGAGGTCGCGGGGCGGGCAGCGCGCGCACACGTCTCCCTGCACGAGCCCCACGTCGCGCTTGCTGTAGGCGGCGCACAGCGGCTCGGAGCAGATCACCTTGTTGGTCTTCCAGCCGAACACGAACGCCGTGCTGACGTTGGCCGCGCCCGCGTACAGCCGCAGCACGGAGAAGTCGCAGCGGAACAGCGAGCTCATCATGTCGCGCACGGCGCCCTGCAGGCTGGCCGCGTCGCCCGGGTACAGCGCCTGCCACATATTCCACATGGGCTCGTAGAGGTAGAAGACGTCCGGGTGCTGGTTGAACAGCTCGCCCAGGAACGACGAGCCCGTCCTCCACGTGGCGTGCAGATAGATGTGGATCTTGGTGTCGTTCCTGATGCCGCCGTCCTCGCCCGCCGCCTCCGTACCGTTACCTCCTCCTCCGGCTCCTCCTGCCGCTCCGCCGCCGATGCCGCTCCACAGCGCCATAGTGTTCTCCAGGTCGGGGCACCTCTGCTGCTGCACTGCATGCTTGGCGTGAGCCGAGTGACCGCGGTAGTCCAGCACGTACGGGACGAGCAGCAGCAGGACCGAGTAGGCGACGATGAGGATGATGTACTTCTTCTGAAGCCTCCTCTTCATTGCCGCAGCGATCGGCTCGGCGATCCACTCGGATCTGGCGCCCCCGGTACACACAGGACTATCAACAGCCCTCAGCTCCGCTACTTCTGGAAGAGGGGGAGGGAACAAACACGCCCACaccacagagagagagagagagagagagagagagactgtagaGTACACTagcagacacacaaacacaacataaaGGCCAGCAGCCTTTAAAATACGAGCTCACAATcagcaaaaaaagagaagaaactaCAGGATGGCTCACTGGACCAAATTTGAGAAGGAGCTGGAGCAGGAGGTGAAGAGACTGATAGCACACATGACTGGCATTCAAGATGAAGAGGACCAAAACTTCCAAATGGCTCTCAAATTCGCCTGGTCAAATTTCAAGTTTCACCGTTTCCTGGATGTCAGCAGCCACAATGTGCAGCGCTCAATAAATGGGTGAGAATAAgattgtgtttaatttaattaaaacataacacAAAATGTAAGGAGATTTGTGTTTGGAAGATTAtttcttaagccctatccggacgcgTTTAATAACATAGCTATTTGTCATGTTGGGCGCACGTTTCCACGTTTCCACACAACAGCgaatggaaatggaggagctgctgaacgcgatgtcatgtgactgcaAAAGTctccaaaaaactcactggtcctcctgttttttcaatttcacTCCAGATGCAGAGGTTTTACCACTAAGTGAA
>XM_022675125.1
CAGGCAAAGACCAAACAGAATAAGACCACAAGCACACAAAATAGAAtcctggaaaaacaaaaaaatgcaaaatatgaaAGCACAAAAGTTCACAAATAGGCAAAATTCCCAAATCCAGAAAATAAGTCGGTTAATAAAGACAAGGATGGCTCACTGGACCAAATTTGAGAAGGAGCTGGAGCAGGAGGTGAAGAGACTGATAGCACACATGACTGGCATTCAAGATGAAGAGGACCAAAACTTCCAAATGGCTCTCAAATTCGCCTGGTCAAATTTCAAGTTTCACCGTTTCCTGGATGTCAGCAGCCACAATGTGCAGCGCTCAATAAATGGTTGGTGTCTGCTCAAAACTGATATCCACCATGGGATATTGGCGCTGTTACTCTTCCTGTCTGATTCTCCATCTAATACTAACTACAGTGAAAGGCCCAGACTAAAAGAATCTGAAATGAAAGACACCTTTGACTGGGCTAAGTACTTAATGGAAGGAGAGGATATTGAAACAGGGCCTTTTCCTGACACTCCAgAGTGGTCAGAGGATGAAAGCGAGGAAGAAGAAAGTCAGCAGCCCATCAGCAGAGAGGATTCTGGGATACAGGTTGACAGAACACCACAGGAAGATCAGGAACAAAACAATAAGACAGTACAAGTCACTTGGGCTGTAGGTGAACCAGATGCCCGGGCTTGGCTGGAGCTGCATATTGTGACCCCATACTGGGTTCCCCACTCACCCCGTTTTCCACACAGCCTCCATCTACACTCTAATCTGCTCAATGTCTGGGATCAGCATCTCTACAACACTGACCCACTCTACATGCCTGAGGAAAAAGCCTTTGTCACTGAAACACAAGTGATTCGAGAGACCTTATGgCTTTTGTCTGGGGTAAAGAGGCTTTTCATATTTCAGCACCATGATGGAAAAGTAAGCGTGCGGAATGATGTGGTGGTCACCCACTTAACTAATAATTGTTTGAGATCAGTGCTGGAACACATAGCAGCCTACGGCCAGGCAGTGTTTCGTCTCCAGAGGTTCATTGACGAGGTGACTGGTCACAGTTCAGAGCCGTGTCCTCCAGGCCTCAACTCTtcatcttcttcctcctcctcttcatctaaGAAGAACTCTGAGCCCCCTTTCAGAACCTACCAAGCATTTGTGTGGGCACTGTACAAGTATTTTACCAGCTTCAAAGAAGAGCTCTCTGCCATCGAGAGAGAGATTATTGGCAAAGatgAGACGGTGACTTTGTCCTCTGTGTTGGAGCGTCTCAGCCCTCACCTGGCTCAGATCACTGTGCTGCATAGAGTTTTTTGCACCGGGGTGGCTGATGTTCCTCCTGGCACGCCAAATGTGGTGCGAGCCTCACACTTGCTGAACACACTTTACAAGGCCATCATTGAGTACGATAGTGTGGGTGAAGCTTCTGAGCAATCGGTGGCACTTCTTTTCTCACTCTGGGTTGAAACAGTCAGGCCATATCTGGAGATAGTGGATGAATGGATTGTTCACGGTCACTTGTTTGACCCAGCCAAAGAGTTTATAATCCAAAGGAACAAGGATGTGCCTGTGAACCACAGGGACTTTTGGTACGCCACCTACACACTGTACAGTGTGTCTGAGGCAGTGGAGAGTGAGGAGAGACTAAGCGATGCTGCCAGTGGAAGTTCTGGAGGAGAGCAGAGCTCCAGCAGCAGACAGCACACCATGGTGTCCTTCCTCAAGCCTGTACTCAAGCAGATAATCATGGCAGGAAAGTCCATGCAACTTCTGAAGAACCTGGACTGCAAAGAGACGGAGCAGGCTGACGGATCTTCCAGAGATGCAGAGAGAAAAAGTCTCTATACACTCTTCCTGGAATCAGTACAGACTCGACTGCGACGCGGCGAGGAGTCACCCACGGATACAGTTACTGAGCAACAAGCCACAAAGAGGAGTCTAATTAAGATGCAGTCTATTGTGGCCCGTCATCTGGAAATGGACGACATCCATGACCCCCTGCTGGCCATTAACTTTGCCAGGTTATatctggagcagaaggattttCACGAGACGTTTTCTGGTGGGGATGTGATCGTGGATCGTTCATCAGAATCAGTTACATGCCAAACGTTTGAGCTGACTCTGCGCTCGTGTCTGTATCCACACATCGAGAGGAGATATATTGAGTGCTGTGGGAACCTTATGAGAACCCTGAAGAAGGACTACAGGTTACTAGGATACCTTCAGGCCATGAGGAACTATTTCCTGCTGGAGGCTGGTGACACTATGTATGACTTCTACACAGCCATCTTTGACAAGGTACTGGAGAAGGAGAGCTGGCAGCAGCTGGCATTCCTCAACGTGCAGCTGCAGGAGGCTGTGGGACAGCGACACCCGGAGGACAGCAACAGATTGTCAATCTTTCTGGAGACTATTGATCctacaagaaaaaaacagccaatcaacAACCTTGATGGTCTTACTTTGAGTTATAAGGTTCCATGGCCTGTGGATATTGTTATTAGTTCGGAGTGTCAGAAAATCTACAATCAGGTTTTCCTGCTCCTTCTACAAATAAAATGGGCCAAATACAGTCTAGATACATTGCGATTCAGTGATTTGACAGCAGCTGCTAAGAGACACGAAGGAGGCCAGTTTGAAGAGTACACTGGCAAAGAGCCTATAAATCAACAGATCCACAGAATGTTCCTACTGAGGGTCAAGCTAATGCATTTTGTTAACAGCCTGCACAACTACATCATGACTAGGATCCTACACAGCACAGGTTTGGAATTTCAGCACCAAGTACAAGAAGCAAAAGACTTGGACCAGCTCATAAAAATCCACTACAGATATCTGTCCACAATCCATGACCGCTGCCTTCTCAGAGAAAAGGTCAGTTTTGTCAAAGAAGCCATTATGAAGGTCCTTAATTTGGTTCTCATCTTCTCTGACCGATGGCAGGCTGGCTTTGGAGCATGGAAGATTGAATCTATTGACAAAATGGAATCGGATTTTAAGAACTGTCACATGTTCTTGGTGACCATTCTAAATAAGGCTGTCTGCAGAGGATCGTTTCCTCATTtGGAGTCTCTCGCCCTGTCTCTGATGGCTGGTTTTGAGCAGTGCTAGACGACTGTCAACCTCAAACACAGCAACTCTTGACAGCTAAAGCTGAATGGCTTCTTCTGTACtgtctatttttttctcatccTTCTAGGAGGTCTGAGTTTATAGCACATGGTGAACCAGCAGTGTCAATCAGCAGCTCTTTTTCATTGTCTAGgtagctgtgtgtgagtgtgtgtacgcACAAGGGCAGTCAAAGTGAAGACAAGACATTGCACATTGTAATTTTGTAAAAGCAGTTAAATTGTAACTGCTGCACTTAAAAATTGTATAAGGCAAAATTGTTTTCCTCAACAAGTGTATATACCATTGTAGGCATGCAAAGAAATGTATGAATGAAGAGATTTTTGCTACTGGTTATGTGTGTGTCCGAAAATGCATAGGGACAGTATTTTTTGTGAAACAATGTTAAATGAGTTAAatgcctgtatatatatatatatgtctatatgctatttcattgtgtgtgtgtgtgtgtacgtaagTACGTACGTATGTGAACGTATGTGAAAACTATTTTACTCATTCAATGGCTGTTTGTGCACAATAAATGAGTCAAAATTGTAAA

Function

symbol description
tubgcp5 Predicted to enable gamma-tubulin binding activity. Predicted to contribute to microtubule minus-end binding activity. Predicted to be involved in meiotic cell cycle; microtubule cytoskeleton organization; and mitotic cell cycle. Predicted to act upstream of or within microtubule cytoskeleton organization. Predicted to be located in cytoplasm and microtubule cytoskeleton. Predicted to be part of gamma-tubulin complex. Predicted to be active in centrosome and equatorial microtubule organizing center. Orthologous to human TUBGCP5 (tubulin gamma complex associated protein 5).
chst7 Predicted to enable N-acetylglucosamine 6-O-sulfotransferase activity and chondroitin 6-sulfotransferase activity. Predicted to be involved in N-acetylglucosamine metabolic process and chondroitin sulfate biosynthetic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in trans-Golgi network. Is expressed in head; hindbrain; notochord; otic vesicle; and tail bud. Orthologous to human CHST7 (carbohydrate sulfotransferase 7).

NR:

description
LOW QUALITY PROTEIN: gamma-tubulin complex component 5

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0000922 spindle pole cellular_component

KEGG:

id description
K16572 TUBGCP5, GCP5; gamma-tubulin complex component 5

RNA

RNA id representative length rna type GC content exon number start site end site
TU157747 False 888 lncRNA 0.43 2 38246040 38247045
TU157749 False 1338 lncRNA 0.55 4 38246040 38248624
XM_022675125.1 True 3677 mRNA 0.45 24 38233474 38247644

Neighbor

gene id symbol gene type direction distance location
LOC103039807 cyfip1,LOC107673532,LOC107716963,LOC107685293 coding downstream 922 38164962 ~ 38232552 (-)
herc2 herc2 coding downstream 86851 38058927 ~ 38146623 (-)
oca2 oca2,LOC107716962 coding downstream 184586 37904635 ~ 38048888 (-)
gabrb3 gabrb3,LOC107673538,LOC107711086,LOC107585149,LOC107685288,LOC107582723,LOC107733605 coding downstream 637302 37442908 ~ 37596172 (-)
atp10a atp10a,LOC107733604,LOC107711085,LOC107673579,LOC107685287 coding downstream 879082 37274323 ~ 37354392 (-)
slc9a7 slc9a7,LOC107673530,LOC107711095,LOC107753405,LOC107685298 coding upstream 14497 38263121 ~ 38340842 (-)
gtpbp6 gtpbp6,LOC104953295 coding upstream 147242 38395866 ~ 38402553 (-)
LOC103034364 NA coding upstream 158674 38407298 ~ 38411708 (-)
ptger3 ptger3,LOC107585167,LOC107711104,LOC107673459,LOC107682156,LOC107734856 coding upstream 242161 38490785 ~ 38501152 (-)
zranb2 zranb2,LOC107685308,LOC107726518 coding upstream 255502 38504126 ~ 38511378 (-)
G116754 NA non-coding downstream 272863 37953796 ~ 37960611 (-)
G116653 NA non-coding downstream 474314 37640493 ~ 37759160 (-)
G116646 gabra5,LOC107673539,LOC107711088 non-coding downstream 621187 37600824 ~ 37612287 (-)
LOC111193781 NA non-coding downstream 733278 37498363 ~ 37500196 (-)
G116636 NA non-coding downstream 797288 37435883 ~ 37436186 (-)
G116794 NA non-coding upstream 106367 38354991 ~ 38357368 (-)
G116908 NA non-coding upstream 184715 38433339 ~ 38434506 (-)
G116910 NA non-coding upstream 237426 38486050 ~ 38487112 (-)
G116906 NA non-coding upstream 238602 38487226 ~ 38487631 (-)
G116926 NA non-coding upstream 344444 38593068 ~ 38593493 (-)
G116581 eif4b,LOC108441049 other downstream 1187686 37041361 ~ 37045788 (-)
LOC103023810 NA other downstream 1202111 37022175 ~ 37031363 (-)
LOC103028059 ghrl other downstream 2171190 36056563 ~ 36062284 (-)
LOC103031109 uqcc2,cf125,LOC108440614,LOC107580205,LOC107667355,LOC106565356 other downstream 2274656 35955109 ~ 35958818 (-)
LOC103034399 LOC108440553,LOC108271943,LOC107584416,LOC107721179 other downstream 2353183 35869803 ~ 35880291 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other upstream 132646 38381270 ~ 38384598 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other upstream 382013 38630637 ~ 38899446 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other upstream 704538 38953162 ~ 38963694 (-)
LOC103028549 NA other upstream 1035593 39284217 ~ 39291028 (-)
LOC103040080 LOC108440156 other upstream 2111695 40360319 ~ 40363960 (-)

Expression


Co-expression Network