LOC103036266 (LOC108441345)


Basic Information

Item Value
gene id LOC103036266
gene name LOC108441345
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 38390277 ~ 38394530 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU157759
GTTCCTCTATGTGTCTGTTTACAAGGCgtgtttcagttttagtgtttttgaggaGTTCCTGTATCTGCAGTTCTTCTTTGAgcattacttaaaatatttgagtTTCCAAGTCATACAAATCGGACATTTATGGACTTGAATTCACTCCTGTGTTATCTTACTTCACCTTTAACTGATTCAGACTTCAACTTCAGAGACAGGCAGGACTTCACCAGGCTTTCACCAGTAGTTTGCGGTTTCACACCAAACTAGTCCTTTagtccttcattttttttaaataaaagattatTTAATCAGAAATAGTCTATGGCACCTGTTTCAAAAAGTGACACAACCAATGAGGACTGGATGTCCACTCTACCTGAAGAACTGTGGGATCTTCCTCTGACCAGTCTGGCCATACCAGGTAGTCATGATGCAATGAGCTACTGTCTGGACATCACTTCTCCACTGGTCCGTTCAGAGTCCAGCACCCTGAAGATGCTGGATAGAGCTTTCTACTGTTTTACTCGACCACTCATTTATAAATGGGCCACTACACAGGCATGAGCACACCTGGCTGAACATCTGTTTTAAGGAAACACAAGTGTCACAATAACTACCCATAGGAAGTACAAATTAAAGCTCTCCAAGCTGTGGTGGTACACTTTCTGTAGATGTCTTCTACGCACCTGTTATTATCCATGTAAATCATAATCGAAAAAATTTAACTgatataaaatgaaattaatctGCTGTACAGCAGTTCTTAATTcatagttacttttaacatAGTTTTTAAAGTACTGTACATCACCACATAAACATTTTCAATTTGTTTTCAATTTAAACAACATAACAGGTCAGAGACATCCTGGAGCAGCTTGAGGCAGGCATTCGTTACTTTGACTTACGGATTGCCCACAAACAGAATGACTCTTCAGACGATCTGTACTTCACTCATGTCATTTACACCCAAGTCACTGTTGTGGAAACTCTACAGGCTGTCGCTGCATGGCTCTCAGATCACCCTAAGGAAATAGTCATCCTGGCCTGTAGTCATTTTGAAGGCATAAGTGAACAACGTCATGAggaatttattttttccttaaagaaAACCTTTGGCTCGAAACTTTGCCCTCGTaatGCCAGTATAACCTTACGTGGCTTGTGGTCATCAGGCTATCAGGTGATACTTTCGTATGATGACCAGGCAGCAGCACGGCATAAGGTGCTGTGGAACGGAATCCCTTATTGGTGGGCAAACAAAGCCAGTGCTGATGAACTGATCCAGTATCTTGAATGGCAGAAAGAACATGGCCGTCCAGGTGAGGGGAATCTGTGGGTTATAACTGAGTATCTTTGCTTAACTTGAAACAATTGAGGCAAttataagaaaatattaaacggaaatgccaaaagtcatgcgGTATGTATACTGATCATGAAATATTAAttgtgagatgttatcttgttAGATagctggccagtgtgctcatagcAAGGCGATTTGAATGATCAAATGCAAAGTGAGGCCTGATACTGGGTGCCAGATGGAAGGTTTATTCCATTTCCaagttgtgggaaaacaaaaaaatagttacGACTTAAATGTCTTCTTCGGCTCTGTAGTTTAGGTTGATTCAGGCGAGTGAGATTATTTTTATGCCAGTTGCTTTCCAACAAGTGCTGAACACTGAAAAACATTTTCCACATCCTGTTGATAAGTAA
>XM_022675809.1
CACCATGTGACTCACAATTGTACCTGGTGAGAGTGTAGGAGTAGTCTGGTTACTGCAAGTCTGACTGCATGCCTTCAGGCTGCAGatccacaaacacacagaatcAGGAAGTTCCTCTATGTGTCTGTTTACAAGGCgtgtttcagttttagtgtttttgaggaGTTCCTGTATCTGCAGTTCTTCTTTGAgcattacttaaaatatttgagtTTCCAAGTCATACAAATCGGACATTTATGGACTTGAATTCACTCCTGTGTTATCTTACTTCACCTTTAACTGATTCAGACTTCAACTTCAGAGACAGGCAGGACTTCACCAGGCTTTCACCAGTAGTTTGCGGTTTCACACCAAACTAGTCCTTTagtccttcattttttttaaataaaagattatTTAATCAGAAATAGTCTATGGCACCTGTTTCAAAAAGTGACACAACCAATGAGGACTGGATGTCCACTCTACCTGAAGAACTGTGGGATCTTCCTCTGACCAGTCTGGCCATACCAGGTAGTCATGATGCAATGAGCTACTGTCTGGACATCACTTCTCCACTGGTCCGTTCAGAGTCCAGCACCCTGAAGATGCTGGATAGAGCTTTCTACTGTTTTACTCGACCACTCATTTATAAATGGGCCACTACACAGGTCAGAGACATCCTGGAGCAGCTTGAGGCAGGCATTCGTTACTTTGACTTACGGATTGCCCACAAACAGAATGACTCTTCAGACGATCTGTACTTCACTCATGTCATTTACACCCAAGTCACTGTTGTGGAAACTCTACAGGCTGTCGCTGCATGGCTCTCAGATCACCCTAAGGAAATAGTCATCCTGGCCTGTAGTCATTTTGAAGGCATAAGTGAACAACGTCATGAggaatttattttttccttaaagaaAACCTTTGGCTCGAAACTTTGCCCTCGTaatGCCAGTATAACCTTACGTGGCTTGTGGTCATCAGGCTATCAGGTGATACTTTCGTATGATGACCAGGCAGCAGCACGGCATAAGGTGCTGTGGAACGGAATCCCTTATTGGTGGGCAAACAAAGCCAGTGCTGATGAACTGATCCAGTATCTTGAATGGCAGAAAGAACATGGCCGTCCAGGTGAGGGGAATCTGTGGGTTATAACTGAGTATCTTTGCTTAACTTGAAACAATTGAGGCAAttataagaaaatattaaacggaaatgccaaaagtcatgcgGTATGTATACTGATCATGAAATATTAAttgtgagatgttatcttgttAGATagctggccagtgtgctcatagcAAGGCGATTTGAATGATCAAATGCAAAGTGAGGCCTGATACTGGGTGCCAGATGGAAGGTTTATTCCATTTCCaagttgtgggaaaacaaaaaaatagttacGACTTAAATGTCTTCTTCGGCTCTGTAGTTTAGGTTGATTCAGGCGAGTGAGATTATTTTTATGCCAGTTGCTTTCCAACAAGTGCTGAACACTGAAAAACATTTTCCACATCCTGTTG
>XM_022675810.1
TGACACCATGTGACTCACAATTGTACCTGGTGAGAGTGTAGGAGTAGTCTGGTTACTGCAAGTCTGACTGCATGCCTTCAGGCTGCAGatccacaaacacacagaatcAGGAAGTTCCTCTATGTGTCTGTTTACAAGGCgtgtttcagttttagtgtttttgaggaGTTCCTGTATCTGCAGTTCTTCTTTGAgcattacttaaaatatttgagtTTCCAAGTCATACAAATCGGACATTTATGGACTTGAATTCACTCCTGTGTTATCTTACTTCACCTTTAACTGATTCAGACTTCAACTTCAGAGACAGGCAGGACTTCACCAGGCTTTCACCAGTAGTTTGCGGTTTCACACCAAACTAGTCCTTTagtccttcattttttttaaataaaagattatTTAATCAGAAATAGTCTATGGCACCTGTTTCAAAAAGTGACACAACCAATGAGGACTGGATGTCCACTCTACCTGAAGAACTGTGGGATCTTCCTCTGACCAGTCTGGCCATACCAGGTAGTCATGATGCAATGAGCTACTGTCTGGACATCACTTCTCCACTGGTCCGTTCAGAGTCCAGCACCCTGAAGATGCTGGATAGAGCTTTCTACTGTTTTACTCGACCACTCATTTATAAATGGGCCACTACACAGGTCAGAGACATCCTGGAGCAGCTTGAGGCAGGCATTCGTTACTTTGACTTACGGATTGCCCACAAACAGAATGACTCTTCAGACGATCTGTACTTCACTCATGTCATTTACACCCAAGTCACTGTTGTGGAAACTCTACAGGCTGTCGCTGCATGGCTCTCAGATCACCCTAAGGAAATAGTCATCCTGGCCTGTAGTCATTTTGAAGGCATAAGTGAACAACGTCATGAggaatttattttttccttaaagaaAACCTTTGGCTCGAAACTTTGCCCTCGTaatACCAACTGGGTTGGGGGATGGATTATTACAGTATACACTAATGAAAAAATTGGCCAGTATAACCTTACGTGGCTTGTGGTCATCAGGCTATCAGGTGATACTTTCGTATGATGACCAGGCAGCAGCACGGCATAAGGTGCTGTGGAACGGAATCCCTTATTGGTGGGCAAACAAAGCCAGTGCTGATGAACTGATCCA

Function

NR:

description
PREDICTED: PI-PLC X domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157759 True 1710 lncRNA 0.40 4 38390390 38394530
XM_022675809.1 False 1514 mRNA 0.42 5 38390280 38394522
XM_022675810.1 False 1139 mRNA 0.43 6 38390277 38394092

Neighbor

gene id symbol gene type direction distance location
LOC103035541 plcxd1,LOC103035541,LOC105895009,LOC107673474,LOC107711026,LOC107585164,LOC108441321,LOC107753403,LOC108271842 coding upstream 2231 38381185 ~ 38388046 (+)
jade3 jade3,LOC107711098,LOC107685301,LOC107753402,LOC107582729 coding upstream 13850 38357858 ~ 38376427 (+)
rp2 rp2,LOC107753404,LOC107685300,LOC107711097 coding upstream 34286 38347868 ~ 38355991 (+)
chst7 chst7,LOC107582727 coding upstream 127374 38247974 ~ 38262903 (+)
fndc9 fndc9 coding upstream 200346 38184325 ~ 38189931 (+)
nit2 nit2,LOC107582734,LOC107585165,LOC107673472,LOC107685305 coding downstream 8819 38403349 ~ 38407297 (+)
cth cth,LOC102785392 coding downstream 22519 38417049 ~ 38433857 (+)
opa1 opa1,LOC107711112,LOC107582739,LOC107673572,LOC107585173 coding downstream 637597 39032127 ~ 39081111 (+)
hes1 hes1,her6,LOC107711114,LOC107680502,LOC107722674,LOC107685314,LOC107582845 coding downstream 815284 39209814 ~ 39211823 (+)
LOC103022251 brinp3a.2,LOC108440126,LOC107711116,LOC107732449,LOC107685312,LOC107667973,LOC107585215 coding downstream 1122970 39517500 ~ 39594023 (+)
G116730 NA non-coding upstream 156196 38233474 ~ 38234081 (+)
LOC111193782 NA non-coding upstream 503542 37852643 ~ 37886735 (+)
G116580 NA non-coding upstream 589523 37800217 ~ 37800754 (+)
G116574 NA non-coding upstream 717191 37671836 ~ 37673086 (+)
G116553 NA non-coding upstream 953785 37436248 ~ 37436492 (+)
G116837 zranb2,LOC107685308,LOC107726518 non-coding downstream 112251 38506781 ~ 38511435 (+)
G116841 NA non-coding downstream 142313 38536843 ~ 38537047 (+)
G116845 NA non-coding downstream 175874 38570404 ~ 38570657 (+)
G116852 NA non-coding downstream 232264 38626794 ~ 38628164 (+)
G116869 NA non-coding downstream 558697 38953227 ~ 38954811 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other upstream 777955 37524851 ~ 37612322 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other upstream 1268950 37100014 ~ 37121327 (+)
LOC103044253 LOC108440873 other upstream 1676393 36657392 ~ 36713884 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 2030500 36342985 ~ 36359777 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 2402217 35982119 ~ 35988060 (+)
G116997 NA other downstream 964341 39358871 ~ 39359388 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 2404941 40799471 ~ 40808545 (+)
fam183a NA other downstream 2764657 41159187 ~ 41166159 (+)
pomgnt1 pomgnt1,LOC102776429 other downstream 2958971 41353501 ~ 41367729 (+)
G117642 NA other downstream 3957277 42351807 ~ 42355784 (+)

Expression


Co-expression Network