G116794


Basic Information

Item Value
gene id G116794
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 38354991 ~ 38357368 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU157774
CCATTGTCCAAACTACTTCTAATGATAGTGATAATTATATCAGCAACTGGTGTCATTTTTTGTACACTAATCTgactaaatgttttatttgtgtaattGAATGAATACCTTGCTTTGACATAGTAAATGAGACATGAGAAGtctttaaacaaattaatatattgATAAATTACAGTTTACATTCATTTCTACAAAACTGCCATATACAAATAAGAATGATTCAAACGTATAAAAGTACATTGTGAGGCATTTCTCTCAtttgtacaaataaaaatgattgtTTTTGGTCACAGGACTAAAACTGCCATATACAAATAAGAATGATTCAAACGTATAAAAGTACATTGTGAGGCATTTCTCTCAtttgtacaaataaaaatgattgtTTTTGGTCACAGGACTAAAACTGGGCTCATTAAAACATTcatataaaaacagcaaacaaacagTGAACTCCTCTGAGCAGTAGATTCAATTACTGTAGATCTAATTACTGTGAAATTACCTTTTGATATTCCTTTCAAAGCATTTCATAAATAACAGACATTCTGACATTCTCATTCTGACTGAGCATAAATGatccaaaaaaattaaacaaacagtaTTTCATAAAGAAATATAGGCTCTCAAATATTAGGAATATTATAAATCATTCTGATTTCAGACTTTACATTGTCCACATCTAGgcctatatacacacacacacagacacattgaCAGGCTACAAACATGTATAGGAAATGCATACCAACAAACGGAACACACTATTTCCAGTTTTACATttctaaaaacacataaataaatacattaagttattattttCAGCATGATTGACAATGGCCACAGTATTCTTTATTTAGAGTCTGAACTCTCCAGATTCATCTGTTTTAGATTTTCACTGCCTCTACAAATTTTGCACGCAACTGTGTACAAACACAGTAAAATGGCATTAACAGCATAAAAATGTTCTAAtcctcaaaaaatatttttagcagCACTAATTACTCGAGTAAGTGTAAATAGATTAAACACCCTTCAACATGAGAGATGTCAATAACTACACCCatttcatctcatctcattaCTAGATTAGGAAAAAAACCCTCATTCTAACTCACAATACTGGAAgtacaaaatgtataaaacgttttttctttcattcgaTTTACAATCCCATCTGCATGTCAGCAAAGTTGAAAAAGTTGTCAACGTCCCGAGAAGCTGAAGATTTATTCTCAGAAACG

Function

NR:

description
PREDICTED: microtubule-associated protein RP/EB family member 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157774 True 1244 lncRNA 0.31 2 38354991 38357368

Neighbor

gene id symbol gene type direction distance location
slc9a7 slc9a7,LOC107673530,LOC107711095,LOC107753405,LOC107685298 coding downstream 14149 38263121 ~ 38340842 (-)
LOC103039807 cyfip1,LOC107673532,LOC107716963,LOC107685293 coding downstream 122439 38164962 ~ 38232552 (-)
herc2 herc2 coding downstream 208368 38058927 ~ 38146623 (-)
oca2 oca2,LOC107716962 coding downstream 306103 37904635 ~ 38048888 (-)
gabrb3 gabrb3,LOC107673538,LOC107711086,LOC107585149,LOC107685288,LOC107582723,LOC107733605 coding downstream 758819 37442908 ~ 37596172 (-)
gtpbp6 gtpbp6,LOC104953295 coding upstream 38498 38395866 ~ 38402553 (-)
LOC103034364 NA coding upstream 49930 38407298 ~ 38411708 (-)
ptger3 ptger3,LOC107585167,LOC107711104,LOC107673459,LOC107682156,LOC107734856 coding upstream 133417 38490785 ~ 38501152 (-)
zranb2 zranb2,LOC107685308,LOC107726518 coding upstream 146758 38504126 ~ 38511378 (-)
LOC111193784 NA coding upstream 606764 38964132 ~ 38971739 (-)
G116754 NA non-coding downstream 394380 37953796 ~ 37960611 (-)
G116653 NA non-coding downstream 595831 37640493 ~ 37759160 (-)
G116646 gabra5,LOC107673539,LOC107711088 non-coding downstream 742704 37600824 ~ 37612287 (-)
LOC111193781 NA non-coding downstream 854795 37498363 ~ 37500196 (-)
G116636 NA non-coding downstream 918805 37435883 ~ 37436186 (-)
G116908 NA non-coding upstream 75971 38433339 ~ 38434506 (-)
G116910 NA non-coding upstream 128682 38486050 ~ 38487112 (-)
G116906 NA non-coding upstream 129858 38487226 ~ 38487631 (-)
G116926 NA non-coding upstream 235700 38593068 ~ 38593493 (-)
G116927 NA non-coding upstream 238112 38595480 ~ 38596795 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other downstream 106367 38233474 ~ 38248624 (-)
G116581 eif4b,LOC108441049 other downstream 1309203 37041361 ~ 37045788 (-)
LOC103023810 NA other downstream 1323628 37022175 ~ 37031363 (-)
LOC103028059 ghrl other downstream 2292707 36056563 ~ 36062284 (-)
LOC103031109 uqcc2,cf125,LOC108440614,LOC107580205,LOC107667355,LOC106565356 other downstream 2396173 35955109 ~ 35958818 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other upstream 23902 38381270 ~ 38384598 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other upstream 273269 38630637 ~ 38899446 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other upstream 595794 38953162 ~ 38963694 (-)
LOC103028549 NA other upstream 926849 39284217 ~ 39291028 (-)
LOC103040080 LOC108440156 other upstream 2002951 40360319 ~ 40363960 (-)

Expression


Co-expression Network