G116805 (plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164)


Basic Information

Item Value
gene id G116805
gene name plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 38381270 ~ 38384598 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU157786
CTGAGGCCCAGGAAATGGCTGAAAGACAGGATGACTACCTCTTTAGGATGGGCATCCAGCCACACTTTGATTTCCTTCAGTACTGTCTCCACAGTTATAGTGGTGTAAACGCCATGGTAGAAGTACAGATCAGAGGAGCTGTCATTGGGTCGATGTGCTATCCTTAGATCACAGTACCTCACCCCACCGTCCAACTGCTCCCGCACAGTGCACTCCTGCGTTATTGCCCACTTGTAAACAAACGGCCGTATGAGAGGCTTCATGTACTTGTCTAGCTTCTGTAGCATGTCGGGCTGTGTGAGGTCAACTGGAGAGCGGTCGTTTTTATCCAAACAGTAGGTGATAGCGTTGTGACTTCCTGGAATGGCCAAGTTACACAGAGGGACATCCCATAGAGCATTTGGGAGATGGCCCATCCAGCTGTCCATTGGCAAGTCTCTCAGAGACATTTTGGGAACATCTAACAAAGTTGTGGATGACATCTTTAACTAAACGGGTCAAATGGGTCAGTCCAGGTTGATTTTAAACACACTGGATTCAGTAGAAATGATGAGGTGCACCCACAGAAACAGCTTCTTCTCTGTAGAAGTGGTTATATCCAGGTGTCCCATGGTGGTGGTCAGGAAGTCAGGTGTGGGAGCTGAAGCAGCCATTGCCAGTATCAGGTTGAACTTGGGCAGGACACACAGCGCACAGTCCCCGGCTGAGGAGACGAGAGGAGGAAAAGCGGGAAACCGTAGAATAAACATCACGGCATTGTATCCGCTCAGGTTTAGGTTTAAACGGGGGTCTTTAGTAGCAGTGAGCAGAGTGAGCCCCGCGCTGAGCCCCTCTACTCATCCCCGCTGAGCCGGACAGCCTGGAGAGGAGACCGGGCTGCTCCTCTACGGCAGCCGGGCGAAGGCGGGGTTTCCACTGggggaggaaaaagagagacgAGGCGATGACTAGTTCCGCACGCAGTCTGATAGGAGTACCACAACTTCCCAACACGAACCCGCACCCTCTCTGCCTGTTCCCGGCCTATACAGCCGTATTCTCGCAGTGAGGGTC

Function

symbol description
plcxd1 Predicted to enable phosphoric diester hydrolase activity. Predicted to act upstream of or within lipid metabolic process. Orthologous to human PLCXD1 (phosphatidylinositol specific phospholipase C X domain containing 1).

NR:

description
PI-PLC X domain-containing protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157786 True 1053 TUCP 0.52 5 38381270 38384598

Neighbor

gene id symbol gene type direction distance location
slc9a7 slc9a7,LOC107673530,LOC107711095,LOC107753405,LOC107685298 coding downstream 40428 38263121 ~ 38340842 (-)
LOC103039807 cyfip1,LOC107673532,LOC107716963,LOC107685293 coding downstream 148718 38164962 ~ 38232552 (-)
herc2 herc2 coding downstream 234647 38058927 ~ 38146623 (-)
oca2 oca2,LOC107716962 coding downstream 332382 37904635 ~ 38048888 (-)
gabrb3 gabrb3,LOC107673538,LOC107711086,LOC107585149,LOC107685288,LOC107582723,LOC107733605 coding downstream 785098 37442908 ~ 37596172 (-)
gtpbp6 gtpbp6,LOC104953295 coding upstream 11268 38395866 ~ 38402553 (-)
LOC103034364 NA coding upstream 22700 38407298 ~ 38411708 (-)
ptger3 ptger3,LOC107585167,LOC107711104,LOC107673459,LOC107682156,LOC107734856 coding upstream 106187 38490785 ~ 38501152 (-)
zranb2 zranb2,LOC107685308,LOC107726518 coding upstream 119528 38504126 ~ 38511378 (-)
LOC111193784 NA coding upstream 579534 38964132 ~ 38971739 (-)
G116794 NA non-coding downstream 23902 38354991 ~ 38357368 (-)
G116754 NA non-coding downstream 420659 37953796 ~ 37960611 (-)
G116653 NA non-coding downstream 622110 37640493 ~ 37759160 (-)
G116646 gabra5,LOC107673539,LOC107711088 non-coding downstream 768983 37600824 ~ 37612287 (-)
LOC111193781 NA non-coding downstream 881074 37498363 ~ 37500196 (-)
G116908 NA non-coding upstream 48741 38433339 ~ 38434506 (-)
G116910 NA non-coding upstream 101452 38486050 ~ 38487112 (-)
G116906 NA non-coding upstream 102628 38487226 ~ 38487631 (-)
G116926 NA non-coding upstream 208470 38593068 ~ 38593493 (-)
G116927 NA non-coding upstream 210882 38595480 ~ 38596795 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other downstream 132646 38233474 ~ 38248624 (-)
G116581 eif4b,LOC108441049 other downstream 1335482 37041361 ~ 37045788 (-)
LOC103023810 NA other downstream 1349907 37022175 ~ 37031363 (-)
LOC103028059 ghrl other downstream 2318986 36056563 ~ 36062284 (-)
LOC103031109 uqcc2,cf125,LOC108440614,LOC107580205,LOC107667355,LOC106565356 other downstream 2422452 35955109 ~ 35958818 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other upstream 246039 38630637 ~ 38899446 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other upstream 568564 38953162 ~ 38963694 (-)
LOC103028549 NA other upstream 899619 39284217 ~ 39291028 (-)
LOC103040080 LOC108440156 other upstream 1975721 40360319 ~ 40363960 (-)
LOC103034527 NA other upstream 2346698 40731296 ~ 40769682 (-)

Expression


Co-expression Network