G116886


Basic Information

Item Value
gene id G116886
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 38980409 ~ 38983559 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU157880
AAAGAATTAAGAGAACACTGCAAAGTTTTCTAAAAATCAGCATCTCTACATGTATGACGGCCATTCCATTCCAGTACAcctcattttacttaaatttagtgaaagtttttttaatttagaaagTAATTTAGTGGTGTCCATTTTTGGCGTGTTTTGGCATCATTTGGCTGGACAACTGGACAATCAGCTGTGGGTTGAATCTAgagaaaagtgttaaataaaggtGCTGTTGTACTCAAAGACTTATGAATACATTCAGAATAATATCTTTTGTCATTGACttaaataataacatagacCTAAATATTTCAAGTGAAAATATTTTCTGTACATTGTTATTTAATTGATAGATATGATAAAGTAAAGGTGTACATTGTAGTCTTGCCCCAGAGAGAACAGTGGCTGGAAGAAGAGGAAGGTCCGgattcctcttcctcctctgtcTGCTCTTGCCCTGCTAAACCTTCATCCTCAGAGCTGTCtaacacatctctctctcctctgcctTCTCCTTCAATACTTCCATCTTCCTTCTCTTCTTCTGACAGCTTAATGTCTGAATTTCCCTCAACAATTTGCAGCAAAATCCTCTCTGCCTCTGATAATGAATCCTGCCCTtctcatgtttaaaaaaaacagaacaaaatcaaaaacataaCTACCAATGTCCACTACAGAGGGCATGTCTTAAAAGCTTAAATATTGTAATGAAACAGGGTCACACTGACTTTTAAATAGATTTAACATGTTCCTAagagatttatttaaaatataacacaaacaTTTCAAAACAATATTTGTTGAGTTTTAAGTATTTTGCACTTACTTTTCCTTTTGCCGTAAAATGCCCCAGTGGTGAAGGATGCCATTTTCTTTGCTGAGAAAAAGGAAGTTTCTAAaacttcagtgttttatttgtgttaagTAACACATATATATTGTTTGCATTAGTACTATACGTgacttttacaaacacaaactgtAGTCATGAATGATGACGAATGAGAAAACATGGCTGACACAAACTCTCCATATCCACAAGGTAAGTGAGTGTAATAAAGACAGTAAATATAAGCAAATGTAAAAGACAGagctaaaaaaagaaatcacttcTGGAGCAGAGGAAGCAGTCTTTGGATTCTCCAACAGAGAGAAACGTCCCTCCTCGATCACTGTGTTGGTGAGTTGCAGTTTCGACATAGCGCGCGAGTAAATTATCTCCTCCACTGTGTCCTTACCAAGGAGTCTGATTACTTTTACAGCc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157880 True 1264 lncRNA 0.36 2 38980409 38983559

Neighbor

gene id symbol gene type direction distance location
cth cth,LOC102785392 coding upstream 546552 38417049 ~ 38433857 (+)
nit2 nit2,LOC107582734,LOC107585165,LOC107673472,LOC107685305 coding upstream 573112 38403349 ~ 38407297 (+)
LOC103035541 plcxd1,LOC103035541,LOC105895009,LOC107673474,LOC107711026,LOC107585164,LOC108441321,LOC107753403,LOC108271842 coding upstream 592363 38381185 ~ 38388046 (+)
jade3 jade3,LOC107711098,LOC107685301,LOC107753402,LOC107582729 coding upstream 603982 38357858 ~ 38376427 (+)
rp2 rp2,LOC107753404,LOC107685300,LOC107711097 coding upstream 624418 38347868 ~ 38355991 (+)
opa1 opa1,LOC107711112,LOC107582739,LOC107673572,LOC107585173 coding downstream 48568 39032127 ~ 39081111 (+)
hes1 hes1,her6,LOC107711114,LOC107680502,LOC107722674,LOC107685314,LOC107582845 coding downstream 226255 39209814 ~ 39211823 (+)
LOC103022251 brinp3a.2,LOC108440126,LOC107711116,LOC107732449,LOC107685312,LOC107667973,LOC107585215 coding downstream 533941 39517500 ~ 39594023 (+)
LOC103028032 brinp3a.1,LOC108441513,LOC107585174,LOC107711117,LOC107732447,LOC107685317 coding downstream 970914 39954473 ~ 40009536 (+)
LOC103027818 rgs8,LOC108441527,LOC108271678,LOC107711118,LOC107551030,LOC107732448,LOC107564081 coding downstream 1240492 40224051 ~ 40259219 (+)
G116869 NA non-coding upstream 25598 38953227 ~ 38954811 (+)
G116852 NA non-coding upstream 352245 38626794 ~ 38628164 (+)
G116845 NA non-coding upstream 409752 38570404 ~ 38570657 (+)
G116841 NA non-coding upstream 443362 38536843 ~ 38537047 (+)
G116837 zranb2,LOC107685308,LOC107726518 non-coding upstream 468974 38506781 ~ 38511435 (+)
G116957 NA non-coding downstream 101120 39084679 ~ 39084900 (+)
G116960 NA non-coding downstream 167270 39150829 ~ 39151218 (+)
G116975 NA non-coding downstream 288338 39271897 ~ 39282073 (+)
G116978 NA non-coding downstream 300663 39284222 ~ 39285631 (+)
G116979 NA non-coding downstream 302148 39285707 ~ 39287709 (+)
LOC103036266 LOC108441345 other upstream 585879 38390277 ~ 38394530 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other upstream 1368087 37524851 ~ 37612322 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other upstream 1859082 37100014 ~ 37121327 (+)
LOC103044253 LOC108440873 other upstream 2266525 36657392 ~ 36713884 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 2620632 36342985 ~ 36359777 (+)
G116997 NA other downstream 375312 39358871 ~ 39359388 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 1815912 40799471 ~ 40808545 (+)
fam183a NA other downstream 2175628 41159187 ~ 41166159 (+)
pomgnt1 pomgnt1,LOC102776429 other downstream 2369942 41353501 ~ 41367729 (+)
G117642 NA other downstream 3368248 42351807 ~ 42355784 (+)

Expression


Co-expression Network