G116906


Basic Information

Item Value
gene id G116906
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 38487226 ~ 38487631 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU157910
tatctctgcctATGAATGTTTTGAAGGGTTTCACTTCTATTTCtcatagaaatgctccaaaattacattaaataaaatgtctaaaatacatatatacagttttggaaacaaataagagactactttaaaaattatgtgtttcttttattttaccaaactgaaaaactcTGAGATATaatgaagaagaagatggatgatcacaagccatcagaccaagctggtttcgcataaagttatccaaaagcagtgtgtaagactggtggaggagaacataccaagatgcatgaaaactgtgattaaaaaccagcaaatatttatttctgaactcttaaaacgttatgaatatgaacatgttttctttgcattatttggggtctgaaagctctgcatctattttgttatttca

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04640 Hematopoietic cell lineage

RNA

RNA id representative length rna type GC content exon number start site end site
TU157910 True 406 lncRNA 0.31 1 38487226 38487631

Neighbor

gene id symbol gene type direction distance location
LOC103034364 NA coding downstream 75518 38407298 ~ 38411708 (-)
gtpbp6 gtpbp6,LOC104953295 coding downstream 84673 38395866 ~ 38402553 (-)
slc9a7 slc9a7,LOC107673530,LOC107711095,LOC107753405,LOC107685298 coding downstream 146384 38263121 ~ 38340842 (-)
LOC103039807 cyfip1,LOC107673532,LOC107716963,LOC107685293 coding downstream 254674 38164962 ~ 38232552 (-)
herc2 herc2 coding downstream 340603 38058927 ~ 38146623 (-)
ptger3 ptger3,LOC107585167,LOC107711104,LOC107673459,LOC107682156,LOC107734856 coding upstream 3154 38490785 ~ 38501152 (-)
zranb2 zranb2,LOC107685308,LOC107726518 coding upstream 16495 38504126 ~ 38511378 (-)
LOC111193784 NA coding upstream 476501 38964132 ~ 38971739 (-)
chd1l NA coding upstream 484518 38972149 ~ 38996466 (-)
LOC111193785 NA coding upstream 491105 38978736 ~ 38981145 (-)
G116910 NA non-coding downstream 114 38486050 ~ 38487112 (-)
G116908 NA non-coding downstream 52720 38433339 ~ 38434506 (-)
G116794 NA non-coding downstream 129858 38354991 ~ 38357368 (-)
G116754 NA non-coding downstream 526615 37953796 ~ 37960611 (-)
G116653 NA non-coding downstream 728066 37640493 ~ 37759160 (-)
G116926 NA non-coding upstream 105437 38593068 ~ 38593493 (-)
G116927 NA non-coding upstream 107849 38595480 ~ 38596795 (-)
G116933 NA non-coding upstream 137992 38625623 ~ 38626426 (-)
G116923 NA non-coding upstream 139148 38626779 ~ 38628115 (-)
G116946 NA non-coding upstream 513012 39000643 ~ 39002353 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other downstream 102628 38381270 ~ 38384598 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other downstream 238602 38233474 ~ 38248624 (-)
G116581 eif4b,LOC108441049 other downstream 1441438 37041361 ~ 37045788 (-)
LOC103023810 NA other downstream 1455863 37022175 ~ 37031363 (-)
LOC103028059 ghrl other downstream 2424942 36056563 ~ 36062284 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other upstream 143006 38630637 ~ 38899446 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other upstream 465531 38953162 ~ 38963694 (-)
LOC103028549 NA other upstream 796586 39284217 ~ 39291028 (-)
LOC103040080 LOC108440156 other upstream 1872688 40360319 ~ 40363960 (-)
LOC103034527 NA other upstream 2243665 40731296 ~ 40769682 (-)

Expression


Co-expression Network