G116910


Basic Information

Item Value
gene id G116910
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 38486050 ~ 38487112 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU157914
taaacctataaatagcaaaatcagagaaactgattcagaaacttaagtggtctcaattctttccagagctgtatattcaaaaTTAATTATGTTCACTGCcatgtaaaacaaaatatgatGAATCGTGCTTTAATGCAGGCATATGAACTAAAGATCCTGAACAATCAGGTTAATTTGAAGCCACCAGCAAAGCCATGAGTTTTAAAACGTCCCCTGAATGAATCAAGGTCAGACTGTAGTCATGAGGGTGCCAAGGCTTATTTTCAAGTTTCAGGATATTTTTTCATGAATgtacagttttttaaaaaaccTTACTGTCTGCTTACAGAGCACTTACAccattatgagcttttactaataCTATGAGGGCTTTCACTGAACCTACACCAACATGGGGTCTCGTTCTGCGTGTGTGTTCTTGATAAGAAATGTTTGCAAATGCTTGCAGTTGTTTAAAGAGTCTGCTGATTTGTTCTAAGCCATCAGCCAAATATTCTTCGCTTTCTGTGGTGTTTCTGATGTATCTGAATCTGTGCTGCCTGTTCCTACAGGGATGGACTGTGTTTTATCTTGTGGTCTGATTATGTCTGTTATCTGTTATGCTGAAGTGTTCAATTTTGTGAATGTCCATCCAGATTTACACTGTGCTAAAAATGAATATTGCCGCTGCCCAAAGAAAAATGTGTATCTCCAAAAATGGCATTTTTGTTAAATTTCCATCGTATACAGTTAGCATAAAATGATtatattccaagtcatttttgagcatttctatttgtccattcttctttactacattgtttaaataagacagtaaattaaaatgtacaaaaatggagatatacATTCTTTTTGGGCTGTGAAGATACACAGTCACTATCCATCACTGTATTATGAGAATCAGAAAAGGAGTTGTTGTCCTAAAGTCCTAAAGTTAAAGTAGAGCTGACCTTAAGCACTGCAATTCATCTTTGAAATAACCTGATAAAAACTCTCTGTGCTTAACCACCGTTGGTGAATGTGCTGCTCGCCAAGCAGAATTAAAAACTAAGAATGTGAAACA

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04640 Hematopoietic cell lineage

RNA

RNA id representative length rna type GC content exon number start site end site
TU157914 True 1063 lncRNA 0.36 1 38486050 38487112

Neighbor

gene id symbol gene type direction distance location
LOC103034364 NA coding downstream 74342 38407298 ~ 38411708 (-)
gtpbp6 gtpbp6,LOC104953295 coding downstream 83497 38395866 ~ 38402553 (-)
slc9a7 slc9a7,LOC107673530,LOC107711095,LOC107753405,LOC107685298 coding downstream 145208 38263121 ~ 38340842 (-)
LOC103039807 cyfip1,LOC107673532,LOC107716963,LOC107685293 coding downstream 253498 38164962 ~ 38232552 (-)
herc2 herc2 coding downstream 339427 38058927 ~ 38146623 (-)
ptger3 ptger3,LOC107585167,LOC107711104,LOC107673459,LOC107682156,LOC107734856 coding upstream 3673 38490785 ~ 38501152 (-)
zranb2 zranb2,LOC107685308,LOC107726518 coding upstream 17014 38504126 ~ 38511378 (-)
LOC111193784 NA coding upstream 477020 38964132 ~ 38971739 (-)
chd1l NA coding upstream 485037 38972149 ~ 38996466 (-)
LOC111193785 NA coding upstream 491624 38978736 ~ 38981145 (-)
G116908 NA non-coding downstream 51544 38433339 ~ 38434506 (-)
G116794 NA non-coding downstream 128682 38354991 ~ 38357368 (-)
G116754 NA non-coding downstream 525439 37953796 ~ 37960611 (-)
G116653 NA non-coding downstream 726890 37640493 ~ 37759160 (-)
G116646 gabra5,LOC107673539,LOC107711088 non-coding downstream 873763 37600824 ~ 37612287 (-)
G116906 NA non-coding upstream 114 38487226 ~ 38487631 (-)
G116926 NA non-coding upstream 105956 38593068 ~ 38593493 (-)
G116927 NA non-coding upstream 108368 38595480 ~ 38596795 (-)
G116933 NA non-coding upstream 138511 38625623 ~ 38626426 (-)
G116923 NA non-coding upstream 139667 38626779 ~ 38628115 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other downstream 101452 38381270 ~ 38384598 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other downstream 237426 38233474 ~ 38248624 (-)
G116581 eif4b,LOC108441049 other downstream 1440262 37041361 ~ 37045788 (-)
LOC103023810 NA other downstream 1454687 37022175 ~ 37031363 (-)
LOC103028059 ghrl other downstream 2423766 36056563 ~ 36062284 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other upstream 143525 38630637 ~ 38899446 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other upstream 466050 38953162 ~ 38963694 (-)
LOC103028549 NA other upstream 797105 39284217 ~ 39291028 (-)
LOC103040080 LOC108440156 other upstream 1873207 40360319 ~ 40363960 (-)
LOC103034527 NA other upstream 2244184 40731296 ~ 40769682 (-)

Expression


Co-expression Network