G116923


Basic Information

Item Value
gene id G116923
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 38626779 ~ 38628115 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU157929
GGATCTCAGATCCCAAAACCCAACTCAACTGGTTTACAGCTTCTATACTTTCACAGTACAGAACATTGTGGTGGCTGGCTGGAACAATGGCGTGAATGTATTTAAGTCTTGAGACGACTTCAGCGGTATTCTATTCGTGTGTACATAATAAAGTAGCTGCCAAATGAGAGCGTGTGGCTTCTAACAGTGTTTTCTTCCGTGTGTTTTGTCACCCCATCCCTCATTACTGTCAGTGAACTGGAAAATAAGTTAGTCAGGCAGCGATGCGGCGTTCCTGATAAAGCTTTAAAGCTATACGTTCTTAACTGAGCTATCTAATCCAGAGCGCTGTGTGACACAGATGAGGTCGTTTCATCACCGCCAGCGTTTTATGTGATGTGTGGAAGGTGTGGCTGTTGGCATTTCATAGATTTTAAGAATAGTGAACGCTCAATAGAACTGGCAGTGACTACAGaggttatttctttctttcttttcttttctctctctctctctgtgtctgtctgttgaGTCCCATCAAGTGTCAGTTGGTCTGTTTTGCCATCAGCTTATGGTGTAGGAATGGCAGGGGAAACTTGCACAGCTGCATCTAACATTCATATCTTAACCAATCACCACTGTCtggtattatattttaaaagaggGATGAATCAGCCAGTGCCAttgtttgatttgattgattcacctttaaaaaaaaaaaaagcctcccCCCTCTCTGTTTTCAAACCCCCAACCAAGAGCAGGGTCTTTCTCTTATTTGCTCTTCCTCTTATATCTTCCTGTAGATAATATGtccatttaaataaattatcattattattatttttttattttttctttcaggGTGGTGACCATGTGAAGTGAACAGCGTAAACATATCCGGGGGCCTACtatgtgttttaattattattactttatttatgattttttttttctttttgttttttttattattattattagtatatcaGTTTCTGTTTTTGCTTCAAATTTTCCTCAAAATCATGATGCTGAAAAATTCTGTGATGAGAAATCTGAAATGGTCATCTTTACTTAAATGTGTATGGAGGTACTTTAGCCACCAGGGATATAGTTGTATATTTATAGGCTCTAGATCACTGGAATGACATATATGGCTTTAAGTGGCattgatatatattgatatttgtcgagaacaacaacaaaaaaaagaatcatatactttaattactttaaagCTTACATTGTGAATAGCACGTATGCAAGTTCATTTTCATCATGTTTGATGTAATTTTGTAGCAGTGGTTTGATACTAATAAATGGAAGTTGGTGATGGAACTGTGAATTGTGGTTTGcga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157929 True 1337 lncRNA 0.37 1 38626779 38628115

Neighbor

gene id symbol gene type direction distance location
zranb2 zranb2,LOC107685308,LOC107726518 coding downstream 115401 38504126 ~ 38511378 (-)
ptger3 ptger3,LOC107585167,LOC107711104,LOC107673459,LOC107682156,LOC107734856 coding downstream 125627 38490785 ~ 38501152 (-)
LOC103034364 NA coding downstream 215071 38407298 ~ 38411708 (-)
gtpbp6 gtpbp6,LOC104953295 coding downstream 224226 38395866 ~ 38402553 (-)
slc9a7 slc9a7,LOC107673530,LOC107711095,LOC107753405,LOC107685298 coding downstream 285937 38263121 ~ 38340842 (-)
LOC111193784 NA coding upstream 336017 38964132 ~ 38971739 (-)
chd1l NA coding upstream 344034 38972149 ~ 38996466 (-)
LOC111193785 NA coding upstream 350621 38978736 ~ 38981145 (-)
LOC103032030 zgc:110788,LOC108440097,LOC107711028,LOC107673477,LOC107726515,LOC107585211,LOC107580362 coding upstream 368763 38996878 ~ 39000165 (-)
LOC103031712 tmem45a,LOC107685333 coding upstream 374587 39002702 ~ 39011754 (-)
G116933 NA non-coding downstream 353 38625623 ~ 38626426 (-)
G116927 NA non-coding downstream 29984 38595480 ~ 38596795 (-)
G116926 NA non-coding downstream 33286 38593068 ~ 38593493 (-)
G116906 NA non-coding downstream 139148 38487226 ~ 38487631 (-)
G116910 NA non-coding downstream 139667 38486050 ~ 38487112 (-)
G116946 NA non-coding upstream 372528 39000643 ~ 39002353 (-)
G116954 opa1,LOC107585173 non-coding upstream 418232 39046347 ~ 39049565 (-)
G116961 NA non-coding upstream 522713 39150828 ~ 39151231 (-)
G116964 NA non-coding upstream 557400 39185515 ~ 39185756 (-)
G117002 NA non-coding upstream 733355 39361470 ~ 39361798 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other downstream 242181 38381270 ~ 38384598 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other downstream 378155 38233474 ~ 38248624 (-)
G116581 eif4b,LOC108441049 other downstream 1580991 37041361 ~ 37045788 (-)
LOC103023810 NA other downstream 1595416 37022175 ~ 37031363 (-)
LOC103028059 ghrl other downstream 2564495 36056563 ~ 36062284 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other upstream 2522 38630637 ~ 38899446 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other upstream 325047 38953162 ~ 38963694 (-)
LOC103028549 NA other upstream 656102 39284217 ~ 39291028 (-)
LOC103040080 LOC108440156 other upstream 1732204 40360319 ~ 40363960 (-)
LOC103034527 NA other upstream 2103181 40731296 ~ 40769682 (-)

Expression


Co-expression Network