G116946


Basic Information

Item Value
gene id G116946
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 39000643 ~ 39002353 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU157957
aactcatttttgccgagggccacattggcatattggctgtcctctgagggccagatgtaacttataaatataagaaaatgtaaccagatgtaatacaaaatgaatgtaattactccttaatgttaaataactctcaatatactatttattcaatcaaatattacagttgcatggaaaaatggttgcttgttgctctattaacataaatccttttaatttataagttatattaactttgatcaaaacgtttgatactgaaataaggcttaataaatataaaatcaaaaattgtgagctgtgacagatttagcatttcctcagatttagcagttcctcatccaaccactagtcggagctgcagctgcagcaccacaagcccgcagtctttgcttagtcagagctgcagcccagccacgggctacaggactcagctgagcctgtctggagcgtttttaaaaatttgtaagttcttctgtgtatgaaataaaataaccccactaaccggataatacagctctctacagttcatctttcagcccaagcagctaacagcagcagtttagagcagccgtcacggaggcactgctgggattacattataaacaggtcagttagcgcgctgctaacctcaggatgtttataactacggagtttagtggacacaccacggcagcaaggttagactgttgaaggctactgaagactactaaagcaggcaacgcagcgtaagcaaaaaaaaaacaaaaaccacacacacacaccaaaatacaagttaagataaaatatgaaaacgaacataataaagcataaataattaaattgaattgcgggccagatgtatgtttattttgttaacccgtgaggggccgtatgaaaccgcgtcgcgggccgcatgtggcccgcgggccgctactttgagacccctgttTT
>TU157958
aactcatttttgccgagggccacattggcatattggctgtcctctgagggccagatgtaacttataaatataagaaaatgtaaccagatgtaatacaaaatgaatgtaattactccttaatgttaaataactctcaatatactatttattcaatcaaatattacagttgcatggaaaaatggttgcttgttgctctattaacataaatccttttaatttataagttatattaactttgatcaaaacgtttgatactgaaataaggcttaataaatataaaatcaaaaattgtgagctgtgacagatttagcatttcctcagatttagcagttcctcatccaaccactagtcggagctgcagctgcagcaccacaagcccgcagtctttgcttagtcagagctgcagcccagccacgggctacaggactcagctgagcctgtctggagcgtttttaaaaatttgtaagttcttctgtgtatgaaataaaataaccccactaaccggataatacagctctctacagttcatctttcagcccaagcagctaacagcagcagtttagagcagcgtcacggaggcactgctgggattacattataaacaggtcagttagcgcgctgctaacctcaggatgtttataactacggagtttagtggacacaccacggcagcaaggttagactgttgaaggctactgaagactactaaagcaggcaacgcagcgtaagcaaaaaaaaaacaaaaaccacacacacacaccaaaatacaagttaagataaaatatgaaaacgaacataataaagcataaataattaaattgaattgcgggccagatgtatgtttattttgttaacccgtgaggggccgtatgaaaccgcgtcgcgggccgcatgtggcccgcgggccgctactttgagacccctgttTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157957 True 930 lncRNA 0.40 2 39000643 39002353
TU157958 False 929 lncRNA 0.40 2 39000643 39002353

Neighbor

gene id symbol gene type direction distance location
LOC103032030 zgc:110788,LOC108440097,LOC107711028,LOC107673477,LOC107726515,LOC107585211,LOC107580362 coding downstream 478 38996878 ~ 39000165 (-)
chd1l NA coding downstream 4177 38972149 ~ 38996466 (-)
LOC111193785 NA coding downstream 19498 38978736 ~ 38981145 (-)
LOC111193784 NA coding downstream 28904 38964132 ~ 38971739 (-)
zranb2 zranb2,LOC107685308,LOC107726518 coding downstream 489265 38504126 ~ 38511378 (-)
LOC103031712 tmem45a,LOC107685333 coding upstream 349 39002702 ~ 39011754 (-)
lnp1 lnp1 coding upstream 10685 39013038 ~ 39025162 (-)
LOC111193786 NA coding upstream 269437 39271790 ~ 39282915 (-)
uhmk1 uhmk1,LOC107692420 coding upstream 1617129 40619482 ~ 40636689 (-)
LOC103034848 NA coding upstream 1752995 40755348 ~ 40777657 (-)
G116923 NA non-coding downstream 372528 38626779 ~ 38628115 (-)
G116933 NA non-coding downstream 374217 38625623 ~ 38626426 (-)
G116927 NA non-coding downstream 403848 38595480 ~ 38596795 (-)
G116926 NA non-coding downstream 407150 38593068 ~ 38593493 (-)
G116906 NA non-coding downstream 513012 38487226 ~ 38487631 (-)
G116954 opa1,LOC107585173 non-coding upstream 43994 39046347 ~ 39049565 (-)
G116961 NA non-coding upstream 148475 39150828 ~ 39151231 (-)
G116964 NA non-coding upstream 183162 39185515 ~ 39185756 (-)
G117002 NA non-coding upstream 359117 39361470 ~ 39361798 (-)
G117005 NA non-coding upstream 372580 39374933 ~ 39375276 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other downstream 36949 38953162 ~ 38963694 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other downstream 101197 38630637 ~ 38899446 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other downstream 616045 38381270 ~ 38384598 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other downstream 752019 38233474 ~ 38248624 (-)
G116581 eif4b,LOC108441049 other downstream 1954855 37041361 ~ 37045788 (-)
LOC103028549 NA other upstream 281864 39284217 ~ 39291028 (-)
LOC103040080 LOC108440156 other upstream 1357966 40360319 ~ 40363960 (-)
LOC103034527 NA other upstream 1728943 40731296 ~ 40769682 (-)
LOC103041916 LOC107758363,LOC107684070,LOC107692412 other upstream 1813780 40816133 ~ 41017814 (-)

Expression


Co-expression Network