G116978


Basic Information

Item Value
gene id G116978
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 39284222 ~ 39285631 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU157997
TGAGGAGTGTAATTTATTTGCTGACAGAAAATATATTCAATCaaattacatatatacatttaattctTTTATAAGGTAACAGGCAATGCATTAGAATTAGGATCAGATCTAATATTAGGTAATGTTAATTCTGTGTATAGTATTGAACAAAGCAGCTTGAAAGAAGAAGTATAATCCtgactccagaagacatacagtaatacagtttACATTTACCATGAAGTATCTATTAACTTAGACATTTTGACAAACAGATATAATTCCCACATAATTTAGCATGCAGAGATTTTTATGCaaaattatttatacaaaacagTCATTAGTAAAACAAATGCAGTCAGAAATGTGTAGTTTTACTGCCCATTTCTAATTTTGTTGAGAAATCATATTTGtcgtaaacattttatttttaatgcattcaaccagaaagaaaacaaaaataaaaaaatgtatttattacagaTGAATAAGAGGAAAGAAATGCACTTTTGATATTCTATgctaaacacagagaaaaagttaaacatttttattaatgtctGAAAGCATCACTTACATCACTGTGGCCACCCTTTATTTATTACATCTTTAATTGGTATGACTTTATTTGGATAGGTTATGGATTATAGATGTCTTACAGATGCTCAACTATAATTCaacaaaaaatcaaacaaatgtttattaaatgcaaataaatttcatggttttttttaaatggcaccCTATACCCAACTCTAACCTGAATTCCAATCTTAACATGTTAATGacaagtttagggttagatttatgATTTAGGGTTAGGCtgaggttttagggttgattcatggttaaggttaggcttAAGATTAGAGTTAGGTGTATGGTTGGATataaggtttaggtttagggttagttCTAAGGTTTGGGTcaggttttagggttaattcatggttaaggttaggcttaagttagggttaggttttttAGAGaattaacatttacattcaacttaATGTTAAGTAAATGTTAGTGGAATGTTAGGTGAGCATCTGTATTGCACCAttccatttaaatgtaaaaaaggtaAGAAATGACACAGAAACcccaaaaactaaatataatatcagtttttttttcttcagatttttaaatgttttgatttCTCTTGTTTAACTAGTCTTTTTAATAGATTCAACaatgtgtgttgctgtgtggaGTGGGCAGGTCTGGCCATTAATTTTTTATAAGGTTGAAACCTTAATTGCTGTTCATCAGATGAGGACAATTTCTGGGGGTCTTACGATATCAAAGATTTATCTCAAtactttaaatca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157997 True 1313 lncRNA 0.30 2 39284222 39285631

Neighbor

gene id symbol gene type direction distance location
hes1 hes1,her6,LOC107711114,LOC107680502,LOC107722674,LOC107685314,LOC107582845 coding upstream 72399 39209814 ~ 39211823 (+)
opa1 opa1,LOC107711112,LOC107582739,LOC107673572,LOC107585173 coding upstream 203111 39032127 ~ 39081111 (+)
cth cth,LOC102785392 coding upstream 850365 38417049 ~ 38433857 (+)
nit2 nit2,LOC107582734,LOC107585165,LOC107673472,LOC107685305 coding upstream 876925 38403349 ~ 38407297 (+)
LOC103035541 plcxd1,LOC103035541,LOC105895009,LOC107673474,LOC107711026,LOC107585164,LOC108441321,LOC107753403,LOC108271842 coding upstream 896176 38381185 ~ 38388046 (+)
LOC103022251 brinp3a.2,LOC108440126,LOC107711116,LOC107732449,LOC107685312,LOC107667973,LOC107585215 coding downstream 231869 39517500 ~ 39594023 (+)
LOC103028032 brinp3a.1,LOC108441513,LOC107585174,LOC107711117,LOC107732447,LOC107685317 coding downstream 668842 39954473 ~ 40009536 (+)
LOC103027818 rgs8,LOC108441527,LOC108271678,LOC107711118,LOC107551030,LOC107732448,LOC107564081 coding downstream 938420 40224051 ~ 40259219 (+)
LOC103040699 LOC103040699,LOC108440142,LOC108271632 coding downstream 987755 40273386 ~ 40276489 (+)
LOC103040381 rgs5a,LOC108441543,LOC107732440,LOC107564083,LOC107685321,LOC107684230 coding downstream 1033127 40318758 ~ 40339674 (+)
G116975 NA non-coding upstream 2149 39271897 ~ 39282073 (+)
G116960 NA non-coding upstream 133004 39150829 ~ 39151218 (+)
G116957 NA non-coding upstream 199322 39084679 ~ 39084900 (+)
G116886 NA non-coding upstream 300663 38980409 ~ 38983559 (+)
G116869 NA non-coding upstream 329411 38953227 ~ 38954811 (+)
G116979 NA non-coding downstream 76 39285707 ~ 39287709 (+)
G116985 NA non-coding downstream 39912 39325543 ~ 39325769 (+)
G116994 NA non-coding downstream 67804 39353435 ~ 39353788 (+)
G117006 NA non-coding downstream 101883 39387514 ~ 39419793 (+)
G117008 NA non-coding downstream 143502 39429133 ~ 39429572 (+)
LOC103036266 LOC108441345 other upstream 889692 38390277 ~ 38394530 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other upstream 1671900 37524851 ~ 37612322 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other upstream 2162895 37100014 ~ 37121327 (+)
LOC103044253 LOC108440873 other upstream 2570338 36657392 ~ 36713884 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 2924445 36342985 ~ 36359777 (+)
G116997 NA other downstream 73240 39358871 ~ 39359388 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 1513840 40799471 ~ 40808545 (+)
fam183a NA other downstream 1873556 41159187 ~ 41166159 (+)
pomgnt1 pomgnt1,LOC102776429 other downstream 2067870 41353501 ~ 41367729 (+)
G117642 NA other downstream 3066176 42351807 ~ 42355784 (+)

Expression


Co-expression Network