LOC103028549


Basic Information

Item Value
gene id LOC103028549
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 39284217 ~ 39291028 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU158009
tgatttaaagtaTTGAGATAAATCTTTGATATCGTAAGACCCCCAGAAATTGTCCTCATCTGATGAACAGCAATTAAGGTTTCAACCTTATAAAAAATTAATGGCCAGACCTGCCCACtccacacagcaacacacattGTTGAATCTATTAAAAAGACTAGTTAAACAAGAGaaatcaaaacatttaaaaatctgaagaaaaaaaaactgatattatatttagtttttgggGTTTCTGTGTCATTTCTtaccttttttacatttaaatggaaTGGTGCAATACAGATGCTCACCTAACATTCCACTAACATTTACTTAACATtaagttgaatgtaaatgttaattCTCTaaaaaacctaaccctaacttaagcctaaccttaaccatgaattaaccctaaaacctgACCCAAACCTTAGaactaaccctaaacctaaaccttatATCCAACCATACACCTAACTCTAATCTTaagcctaaccttaaccatgaatcaaccctaaaacctcaGCCTAACCCTAAATcataaatctaaccctaaacttgtCATTAACATGTTAAGATTGGAATTCAGGTTAGAGTTGGGTATAGggtgccatttaaaaaaaaccatgaaatttatttgcatttaataaacatttgtttgattttttgttGAATTATAGTTGAGCATCTGTAAGACA
>XM_007249063.3
TGGGGACCTAAAACCAAGCCCCTGACTCATTTCCCAATAATGCGAGTCAGGCTGCGAGTGCTTTTGAAAAAGACTGACGTTGCATTGTGctcagctgctgatggaacagGGGAGGAACATGCGGGTGTGAGAAAACCAACTGGAATTTGGAGAAACCCTCTTAACTGGTTGGAAGATAAGGGTGGGACACATTTCAACTGGAAAGAGAAGTGAGAAGAAGGGCACTGATATCTCTGAACTTGCAGCTGCCAACGGTCTCGATGGATCTTGGGCTTTACATCATTCTTGGTGTTTGTGCTGTTAATGCTGTTGTCTGGGGATGCCCACTGCAGTGCCAGTGCAGAAGCAACAAAATTCTATGTCAAGGCCATGAAATTCAAGAGTTTCCATCTGCCATCCCCTCAACCACGAGTACTCTGTATATTTCATTCAGCAACATTTCCTCGCTGAAACCTGCTGACTTTCATGCATTTTCTGAATCTCTCACAATATTTGCTGTCAAGGATTCAAGACTAAGTGACGTGCAGCCCCACACGTTTGACAGCACCTTCAACCTAATCGCCCTGGGGTTCACAGGAACTGATTTAGTCAAGCTACCAGATAACTTGTTTCAGAATTTGCAGTTGCTCACATCTCTCACGTTGAGCAACAACAAACTAAATGAcatctcttcatctctgctAAGTCCTCTTCAAGTTTTGAAGGTCTTAGACCTAAGCAGAAACAAACTCACGTCTATTCCAGAGAATGCATTTCAGGGTCTATTTCATTTGGAGCAGCTTCAGTTGCAGAGAAACAACATTCTGGAACTGGGCAAAGGGACTTTTCATGGGCTCAGCAAGCTTAAAGTCTTGTTCCTCCAGCAGAACGGTCTAAAAGAGCTTCCAGACAATGCCTTTAAGGACCTGGTTAACCTTGAGGCTTTGCATCTGCAGAATAATGCGATCACACACTTACCAGCAGACCTTTTCACACATCAACAGAAGCTGCAAAAGCTCTATCTCTCCAATAACCAATTGTCTGCACTTCCTGGCGGCATCTTCTTGAATCTTCCCAATCTGCGACAGATATCACTTTATGACAACCAGCTGCAGAGTCTGCCTGCTGGAACTTTTGGACCCATGCCTCTCCAGGACCTGTGGCTGTATGACAATATGTTGACCCGGCTTGAGGAGAACGCGTTCAGCAATTTGACTAATGTACGTCTTTTGGTGCTCAGCCGAAATCAGCTCTCCCGTGTCTCGCCTGGTGCCTTCAATGGATTGACAAGCTTGGAAGAAATTTCTTTACACACCAACCAATTAGCCACCATTGAAGAAGGAGTTTTTAGAGGCCTGCCTAAGTTGGTGAACATCTCACTGGAAAATAATAGGATTGCTGACCTTCCTTTGAAACTTTTTGATGGCATCCCCAACTTATTTCAAGTGGAGCTTCAAAATAACTCTCtaccacatttaaaacaagagaTTTTAGACGGACTGACTGGGGCTGAAAGTGTGGTGCTTGCTGAAAATCCTTGGAGGTGTGACCATGACATTGTACCACTTCGGGACTGGCTAAGAAAGAACTCAAACAAAGTCAAAAACGTCACATCTCTTACATGCTTTAGTCCTTCAAACTTGATAGACGTTAGTATAACAAACCTCAATGATGTTGATTTACTTGCGTCACCCACTTCGAAATCCTCTGAAGACGAATCCGTTAGTCCTACAGATAAGCGGCGAAGACCTCACACCCCCCCACCCAGACGGAGCACCGCTGCACCTGTTGCTAACTCCACATCATCTCCAGATAAAAGAGAGGACACCAGCAATGATCACAAAGAGACTGAAGCAATGTCTAAAGACATGTATTTGATCATTATTGCTGTAGTCTGTACGGTAGTCATTATCAGTGTCATCATCTCTGTTGTCTGCTGgaggaaaaacaaacaaggCAGTCAGGACTTAGGCCATCATCCACATACAAACTCAGTTATCTAATGCAAAGCATCTTAAGAATATTTGACAAACTGTTGCGTGGCAGCACACTGGCCATGTTttacttgttaaaaaaaaaggtacaaagATTTGGAAATGACTACTTATTAATATAATGTGTGGAGTGTCCTTTTAGTAGATAGTTAGATATCAGAAAAGGCTTTTCTATATGGAAAATATGTATTAGTAATTATAAAAGTATATAGACACAGCACATCATTAAATGTAATGTTCAGTATTGTAACACTGTGCAAGGGACtatcattaatttatttgatttgctGTGAAAATAACAGTTACGTACAAGTGTATGTCTCCTGAGCCTTCCACAGGAgaaatatctatttaaaaaataattaatttaaatttgatttaaagtaTTGAGATAAATCTTTGATATCGTAAGACCCCCAGAAATTGTCCTCATCTGATGAACAGCAATTAAGGTTTCAACCTTATAAAAAATTAATGGCCAGACCTGCCCACtccacacagcaacacacattGTTGAATCTATTAAAAAGACTAGTTAAACAAGAGaaatcaaaacatttaaaaatctgaagaaaaaaaaaatgaatttaggAGTAAAAATCTTATCGCAAAATGAAAAACTAACAAGATGTTacctgaaaagaaaagaatagtTTGAccacagtaaacaaaaaaaaactgatattatatttagtttttgggGTTTCTGTGTCATTTCTtaccttttttacatttaaatggaaTGGTGCAATACAGATGCTCACCTAACATTCCACTAACATTTACTTAACATtaagttgaatgtaaatgttaattCTCTaaaaaacctaaccctaacttaagcctaaccttaaccatgaattaaccctaaaacctgACCCAAACCTTAGaactaaccctaaacctaaaccttatATCCAACCATACACCTAACTCTAATCTTaagcctaaccttaaccatgaatcaaccctaaaacctcaGCCTAACCCTAAATcataaatctaaccctaaacttgtCATTAACATGTTAAGATTGGAATTCAGGTTAGAGTTGGGTATAGggtgccatttaaaaaaaaccatgaaatttatttgcatttaataaacatttgtttgattttttgttGAATTATAGTTGAGCATCTGTAAGACATCTATAATCCATAACCTATCCAAATAAAGTCATACCAATTAAAGATGTAATAAATAAAGGGTGGCCACAGTGATGTAAGTGATGCTTTCagacattaataaaaatgtttaactttttctctgtgtttagcATAGAATATCAAAAGTGCATTTCTTTCCTCTTATTCAtctgtaataaatacatttttttatttttgttttctttctggttgaatgcattaaaaataaaatgtttacgaCAAATATGATTTCTCAACAAAATTAGAAATGGGCAGTAAAACTACACATTTCTGACTGCATTTGTTTTACTAATGActgttttgtataaataattttGCATAAAAATCTCTGCATGCTAAATTATGTGGGAATTATATCTGTTTGTCAAAATGTCTAAGTTAATAGATACTTCATGGTAAATGTaaactgtattactgtatgtcttctggagtcaGGATTATACTTCTTCTTTCAAGCTGCTTTGTTCAATACTATACACAGAATTAACATTACCTAATATTAGATCTGATCCTAATTCTAATGCATTGCCTGTTACCTTATAAAagaattaaatgtatatatgtaatttGATTGAATATATTTTCTGTCAGCAAATAAATTACACTCCTCACTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158009 False 683 lncRNA 0.32 2 39284852 39285631
XM_007249063.3 True 3762 mRNA 0.37 3 39284217 39291028

Neighbor

gene id symbol gene type direction distance location
LOC111193786 NA coding downstream 1302 39271790 ~ 39282915 (-)
lnp1 lnp1 coding downstream 259055 39013038 ~ 39025162 (-)
LOC103031712 tmem45a,LOC107685333 coding downstream 272463 39002702 ~ 39011754 (-)
LOC103032030 zgc:110788,LOC108440097,LOC107711028,LOC107673477,LOC107726515,LOC107585211,LOC107580362 coding downstream 284052 38996878 ~ 39000165 (-)
chd1l NA coding downstream 287751 38972149 ~ 38996466 (-)
uhmk1 uhmk1,LOC107692420 coding upstream 1328454 40619482 ~ 40636689 (-)
LOC103034848 NA coding upstream 1464320 40755348 ~ 40777657 (-)
LOC103032504 ap1m3,LOC108441657,LOC107724146,LOC107684323,LOC108271949,LOC107692442,LOC106528254 coding upstream 1933813 41224841 ~ 41249611 (-)
c13h1orf210 NA coding upstream 1959989 41251017 ~ 41260579 (-)
orc1 orc1,LOC107725193,LOC105913168,LOC104957406 coding upstream 2033694 41324722 ~ 41335529 (-)
G116964 NA non-coding downstream 98461 39185515 ~ 39185756 (-)
G116961 NA non-coding downstream 132986 39150828 ~ 39151231 (-)
G116954 opa1,LOC107585173 non-coding downstream 234652 39046347 ~ 39049565 (-)
G116946 NA non-coding downstream 281864 39000643 ~ 39002353 (-)
G116923 NA non-coding downstream 656102 38626779 ~ 38628115 (-)
G117002 NA non-coding upstream 70442 39361470 ~ 39361798 (-)
G117005 NA non-coding upstream 83905 39374933 ~ 39375276 (-)
G117009 NA non-coding upstream 138085 39429113 ~ 39429541 (-)
G117026 NA non-coding upstream 206774 39497802 ~ 39498358 (-)
G117059 NA non-coding upstream 366166 39657194 ~ 39657425 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other downstream 320523 38953162 ~ 38963694 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other downstream 384771 38630637 ~ 38899446 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other downstream 899619 38381270 ~ 38384598 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other downstream 1035593 38233474 ~ 38248624 (-)
G116581 eif4b,LOC108441049 other downstream 2238429 37041361 ~ 37045788 (-)
LOC103040080 LOC108440156 other upstream 1069291 40360319 ~ 40363960 (-)
LOC103034527 NA other upstream 1440268 40731296 ~ 40769682 (-)
LOC103041916 LOC107758363,LOC107684070,LOC107692412 other upstream 1525105 40816133 ~ 41017814 (-)

Expression


Co-expression Network