G116997


Basic Information

Item Value
gene id G116997
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 39358871 ~ 39359388 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU158023
tactatccttttagaaagactagagaacatggtcggtgtaaccggaactgccttagcatggtttaaatcgtacttaaccgatcgctatcagtttgtgaggataaatgatatgtcttccagttataccaaggtaagatatggaattccacaaggctctatattaggaccgttattatttacattatatatgctcccactgggcaaagttattagaaaacacaatgtgaattttcattgttatgcggatgacacgcagctcttcatatcagccaaacctgatgacagagtgagattaaagaaaatcgaggattgtgtagaagatgtaaaatcatggatgtcgcacaacttcctcctattaaatagtgataaaacagaagttctcctattaggccccaaagctgctagaaataaattatcagacttaatgctaaatctggctgacttctcagccacccctggttcagcagctaaaaaccttggagttatcatagattcagatctagcattcgataaacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158023 True 518 TUCP 0.38 1 39358871 39359388

Neighbor

gene id symbol gene type direction distance location
hes1 hes1,her6,LOC107711114,LOC107680502,LOC107722674,LOC107685314,LOC107582845 coding upstream 147048 39209814 ~ 39211823 (+)
opa1 opa1,LOC107711112,LOC107582739,LOC107673572,LOC107585173 coding upstream 277760 39032127 ~ 39081111 (+)
cth cth,LOC102785392 coding upstream 925014 38417049 ~ 38433857 (+)
nit2 nit2,LOC107582734,LOC107585165,LOC107673472,LOC107685305 coding upstream 951574 38403349 ~ 38407297 (+)
LOC103035541 plcxd1,LOC103035541,LOC105895009,LOC107673474,LOC107711026,LOC107585164,LOC108441321,LOC107753403,LOC108271842 coding upstream 970825 38381185 ~ 38388046 (+)
LOC103022251 brinp3a.2,LOC108440126,LOC107711116,LOC107732449,LOC107685312,LOC107667973,LOC107585215 coding downstream 158112 39517500 ~ 39594023 (+)
LOC103028032 brinp3a.1,LOC108441513,LOC107585174,LOC107711117,LOC107732447,LOC107685317 coding downstream 595085 39954473 ~ 40009536 (+)
LOC103027818 rgs8,LOC108441527,LOC108271678,LOC107711118,LOC107551030,LOC107732448,LOC107564081 coding downstream 864663 40224051 ~ 40259219 (+)
LOC103040699 LOC103040699,LOC108440142,LOC108271632 coding downstream 913998 40273386 ~ 40276489 (+)
LOC103040381 rgs5a,LOC108441543,LOC107732440,LOC107564083,LOC107685321,LOC107684230 coding downstream 959370 40318758 ~ 40339674 (+)
G116994 NA non-coding upstream 5083 39353435 ~ 39353788 (+)
G116985 NA non-coding upstream 33102 39325543 ~ 39325769 (+)
G116979 NA non-coding upstream 71162 39285707 ~ 39287709 (+)
G116978 NA non-coding upstream 73240 39284222 ~ 39285631 (+)
G116975 NA non-coding upstream 76798 39271897 ~ 39282073 (+)
G117006 NA non-coding downstream 28126 39387514 ~ 39419793 (+)
G117008 NA non-coding downstream 69745 39429133 ~ 39429572 (+)
G117025 NA non-coding downstream 138411 39497799 ~ 39498358 (+)
G117071 NA non-coding downstream 479624 39839012 ~ 39847835 (+)
G117102 NA non-coding downstream 677912 40037300 ~ 40037531 (+)
LOC103036266 LOC108441345 other upstream 964341 38390277 ~ 38394530 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other upstream 1746549 37524851 ~ 37612322 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other upstream 2237544 37100014 ~ 37121327 (+)
LOC103044253 LOC108440873 other upstream 2644987 36657392 ~ 36713884 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 2999094 36342985 ~ 36359777 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 1440083 40799471 ~ 40808545 (+)
fam183a NA other downstream 1799799 41159187 ~ 41166159 (+)
pomgnt1 pomgnt1,LOC102776429 other downstream 1994113 41353501 ~ 41367729 (+)
G117642 NA other downstream 2992419 42351807 ~ 42355784 (+)

Expression


Co-expression Network