G117002


Basic Information

Item Value
gene id G117002
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 39361470 ~ 39361798 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU158031
ttcaggagtttcttaaagatagcgagagattctcctgatctggtagtggaaggtagtttgttccaccattggggaactctgtatgagaacagtctggattgctttgtgtgagtgtttggcaaagcgaggcgatgttcattggaggagcgcagcggccgggaggtagcgtaagccttcaggagtgagtgcaggtaggaaggagcctgttctgtcatcaccttgtaggcgattgtaagagttttgaatttgatgcgagcatcaactggtagccagtggagctcaatgagcagcggggtgacatgtgcccgttttggttggttgaagaccag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158031 True 329 lncRNA 0.50 1 39361470 39361798

Neighbor

gene id symbol gene type direction distance location
LOC111193786 NA coding downstream 78555 39271790 ~ 39282915 (-)
lnp1 lnp1 coding downstream 336308 39013038 ~ 39025162 (-)
LOC103031712 tmem45a,LOC107685333 coding downstream 349716 39002702 ~ 39011754 (-)
LOC103032030 zgc:110788,LOC108440097,LOC107711028,LOC107673477,LOC107726515,LOC107585211,LOC107580362 coding downstream 361305 38996878 ~ 39000165 (-)
chd1l NA coding downstream 365004 38972149 ~ 38996466 (-)
uhmk1 uhmk1,LOC107692420 coding upstream 1257684 40619482 ~ 40636689 (-)
LOC103034848 NA coding upstream 1393550 40755348 ~ 40777657 (-)
LOC103032504 ap1m3,LOC108441657,LOC107724146,LOC107684323,LOC108271949,LOC107692442,LOC106528254 coding upstream 1863043 41224841 ~ 41249611 (-)
c13h1orf210 NA coding upstream 1889219 41251017 ~ 41260579 (-)
orc1 orc1,LOC107725193,LOC105913168,LOC104957406 coding upstream 1962924 41324722 ~ 41335529 (-)
G116964 NA non-coding downstream 175714 39185515 ~ 39185756 (-)
G116961 NA non-coding downstream 210239 39150828 ~ 39151231 (-)
G116954 opa1,LOC107585173 non-coding downstream 311905 39046347 ~ 39049565 (-)
G116946 NA non-coding downstream 359117 39000643 ~ 39002353 (-)
G116923 NA non-coding downstream 733355 38626779 ~ 38628115 (-)
G117005 NA non-coding upstream 13135 39374933 ~ 39375276 (-)
G117009 NA non-coding upstream 67315 39429113 ~ 39429541 (-)
G117026 NA non-coding upstream 136004 39497802 ~ 39498358 (-)
G117059 NA non-coding upstream 295396 39657194 ~ 39657425 (-)
G117064 NA non-coding upstream 369767 39731565 ~ 39731766 (-)
LOC103028549 NA other downstream 70442 39284217 ~ 39291028 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other downstream 397776 38953162 ~ 38963694 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other downstream 462024 38630637 ~ 38899446 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other downstream 976872 38381270 ~ 38384598 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other downstream 1112846 38233474 ~ 38248624 (-)
LOC103040080 LOC108440156 other upstream 998521 40360319 ~ 40363960 (-)
LOC103034527 NA other upstream 1369498 40731296 ~ 40769682 (-)
LOC103041916 LOC107758363,LOC107684070,LOC107692412 other upstream 1454335 40816133 ~ 41017814 (-)

Expression


Co-expression Network