G117071


Basic Information

Item Value
gene id G117071
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 39839012 ~ 39847835 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU158107
CAGGCTATGAACATAAAACAATTAGAACAGTACAATATTCAAAGTCATTAATTTACTATAAACAGGTCAGCTTTTAAACAAAACTATCACTTTTCTGagaaaactacatttaaaagtGTAGCTAGCTCACCCACTAAACcaacatagctagctctagctagcttcccAAGGTCAAACTAACACTCATTCAAAACAGTCCCATAtttcacacaacacactcttTCTAGAACAAATAACTAACAAAATTCCTAATTACAACTTGTATTTTGTACTTTCATTGGGTTATCATCTTCATTTTAGTACCACAAACCTGTAAAACAGGGGAGAAATGAAGAGACAGCTCTGAACTTGACTCAGTCCTCTGCAGTTCTGAGAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158107 True 378 lncRNA 0.35 2 39839012 39847835

Neighbor

gene id symbol gene type direction distance location
LOC103022251 brinp3a.2,LOC108440126,LOC107711116,LOC107732449,LOC107685312,LOC107667973,LOC107585215 coding upstream 244989 39517500 ~ 39594023 (+)
hes1 hes1,her6,LOC107711114,LOC107680502,LOC107722674,LOC107685314,LOC107582845 coding upstream 627189 39209814 ~ 39211823 (+)
opa1 opa1,LOC107711112,LOC107582739,LOC107673572,LOC107585173 coding upstream 757901 39032127 ~ 39081111 (+)
cth cth,LOC102785392 coding upstream 1405155 38417049 ~ 38433857 (+)
nit2 nit2,LOC107582734,LOC107585165,LOC107673472,LOC107685305 coding upstream 1431715 38403349 ~ 38407297 (+)
LOC103028032 brinp3a.1,LOC108441513,LOC107585174,LOC107711117,LOC107732447,LOC107685317 coding downstream 106638 39954473 ~ 40009536 (+)
LOC103027818 rgs8,LOC108441527,LOC108271678,LOC107711118,LOC107551030,LOC107732448,LOC107564081 coding downstream 376216 40224051 ~ 40259219 (+)
LOC103040699 LOC103040699,LOC108440142,LOC108271632 coding downstream 425551 40273386 ~ 40276489 (+)
LOC103040381 rgs5a,LOC108441543,LOC107732440,LOC107564083,LOC107685321,LOC107684230 coding downstream 470923 40318758 ~ 40339674 (+)
nos1ap nos1ap,LOC107711121,LOC107551033 coding downstream 569492 40417327 ~ 40567138 (+)
G117025 NA non-coding upstream 340654 39497799 ~ 39498358 (+)
G117008 NA non-coding upstream 409440 39429133 ~ 39429572 (+)
G117006 NA non-coding upstream 419219 39387514 ~ 39419793 (+)
G116994 NA non-coding upstream 485224 39353435 ~ 39353788 (+)
G116985 NA non-coding upstream 513243 39325543 ~ 39325769 (+)
G117102 NA non-coding downstream 189465 40037300 ~ 40037531 (+)
G117108 NA non-coding downstream 243760 40091595 ~ 40091844 (+)
G117111 NA non-coding downstream 281257 40129092 ~ 40136727 (+)
G117147 NA non-coding downstream 512505 40360340 ~ 40362577 (+)
G117152 NA non-coding downstream 719373 40567208 ~ 40580304 (+)
G116997 NA other upstream 479624 39358871 ~ 39359388 (+)
LOC103036266 LOC108441345 other upstream 1444482 38390277 ~ 38394530 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other upstream 2226690 37524851 ~ 37612322 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other upstream 2717685 37100014 ~ 37121327 (+)
LOC103044253 LOC108440873 other upstream 3125128 36657392 ~ 36713884 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 951636 40799471 ~ 40808545 (+)
fam183a NA other downstream 1311352 41159187 ~ 41166159 (+)
pomgnt1 pomgnt1,LOC102776429 other downstream 1505666 41353501 ~ 41367729 (+)
G117642 NA other downstream 2503972 42351807 ~ 42355784 (+)

Expression


Co-expression Network