G117111


Basic Information

Item Value
gene id G117111
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 40129092 ~ 40136727 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU158160
TTGCAAGTTACTTTCAGGTGGTGATGAGTAACTCGTCCTTTCTAGCTTTTCTTTAGAGCTGAGcagagtaaaatataaagaaataaaaataaaagtttacatCAAAAATACACGGCAGTGGGTGAAcgactgtaaaacacaaaaatacagagaTAGAAATTGACATTAGAAATTAAATACACAGCCATTACATCCAACTTAGTTTACAAAGTTCTGAAATAAAATTCAAAACTCACATCTCAGATCACTTAGAGACTCCCCAAACACACCAGGCCTCTTTAGCCCTCAACCACCTGCTTACAGGTCATCTtcgaaataaaatataataaaataaaaataaaatgcagataCACATGAATTTCGAGTTACAGTCTATCTTCTGTTTAAAACTAACACACTGTATCTGTCTCCAAAGATTCTATGGCTGAATGCAGCCCGCATGGCCTCACATTAAATCTAAATGCATCCTTGAAAATAATGATCAATTCACACAACATATGGTCATCCTCAGTTTATGTATACTTTTAGGAACAGTTTTATACCTATATTAGAGATTATAAATGAAAGATGACTTATTTACCACAAGATTAACTTTTCTCCAGCCAATCTCTGCCCTGCCCAGGAGAACTGCTGCTCACAAAATGGCCTCAGATAAATAAATGGGAAATATAATCCCCCACAAGACCACTCCCTTAAAGAGACAGCATCCTTTTACCCAGGTGCTTATATAAatgcatttttaacataatACATTGCTTGGAAACAAATGTATAcatatgaaataaacaaaacaaataaaaaaactctctttaataaacaaaaagagaacTTTTATTGCCACCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158160 True 844 lncRNA 0.34 2 40129092 40136727

Neighbor

gene id symbol gene type direction distance location
LOC103028032 brinp3a.1,LOC108441513,LOC107585174,LOC107711117,LOC107732447,LOC107685317 coding upstream 119556 39954473 ~ 40009536 (+)
LOC103022251 brinp3a.2,LOC108440126,LOC107711116,LOC107732449,LOC107685312,LOC107667973,LOC107585215 coding upstream 535069 39517500 ~ 39594023 (+)
hes1 hes1,her6,LOC107711114,LOC107680502,LOC107722674,LOC107685314,LOC107582845 coding upstream 917269 39209814 ~ 39211823 (+)
opa1 opa1,LOC107711112,LOC107582739,LOC107673572,LOC107585173 coding upstream 1047981 39032127 ~ 39081111 (+)
cth cth,LOC102785392 coding upstream 1695235 38417049 ~ 38433857 (+)
LOC103027818 rgs8,LOC108441527,LOC108271678,LOC107711118,LOC107551030,LOC107732448,LOC107564081 coding downstream 87324 40224051 ~ 40259219 (+)
LOC103040699 LOC103040699,LOC108440142,LOC108271632 coding downstream 136659 40273386 ~ 40276489 (+)
LOC103040381 rgs5a,LOC108441543,LOC107732440,LOC107564083,LOC107685321,LOC107684230 coding downstream 182031 40318758 ~ 40339674 (+)
nos1ap nos1ap,LOC107711121,LOC107551033 coding downstream 280600 40417327 ~ 40567138 (+)
c13h1orf226 nos1ap coding downstream 443649 40580376 ~ 40600295 (+)
G117108 NA non-coding upstream 37248 40091595 ~ 40091844 (+)
G117102 NA non-coding upstream 91561 40037300 ~ 40037531 (+)
G117071 NA non-coding upstream 281257 39839012 ~ 39847835 (+)
G117025 NA non-coding upstream 630734 39497799 ~ 39498358 (+)
G117008 NA non-coding upstream 699520 39429133 ~ 39429572 (+)
G117147 NA non-coding downstream 223613 40360340 ~ 40362577 (+)
G117152 NA non-coding downstream 430481 40567208 ~ 40580304 (+)
G117154 NA non-coding downstream 482841 40619568 ~ 40620766 (+)
G117156 NA non-coding downstream 487283 40624010 ~ 40630144 (+)
G117183 NA non-coding downstream 680449 40817176 ~ 40821330 (+)
G116997 NA other upstream 769704 39358871 ~ 39359388 (+)
LOC103036266 LOC108441345 other upstream 1734562 38390277 ~ 38394530 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other upstream 2516770 37524851 ~ 37612322 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other upstream 3007765 37100014 ~ 37121327 (+)
LOC103044253 LOC108440873 other upstream 3415208 36657392 ~ 36713884 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 662744 40799471 ~ 40808545 (+)
fam183a NA other downstream 1022460 41159187 ~ 41166159 (+)
pomgnt1 pomgnt1,LOC102776429 other downstream 1216774 41353501 ~ 41367729 (+)
G117642 NA other downstream 2215080 42351807 ~ 42355784 (+)

Expression


Co-expression Network