G117147


Basic Information

Item Value
gene id G117147
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 40360340 ~ 40362577 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU158199
cttttattcataaatattacaataaatatgtgTAACACGTATCAGTAAACAAGTCTGTAAACGGCATATAAACAACCATTTATTCTTATAAGTAAAGATGAAGAAAGTGACATTACAAGAGAAGGACAGAATTAACATTAACAGGATTCACAGCACTGCAGGACGAGCTGACGGGATCACATTGCGTAAGTACAGCTTTACAGGGTTTATTTATAATgaccagatgttttttttttttttttttctgctcatttGAAAATGCCCAACTCTTAATAAATGTACTAGCATGTGTCAACTCactatatcaaaaataaaaaagaaaaaaaaaatgaagttgatgcgtgtgtgtctttgtgtgtatatgtgtgtattagaCGGGTTCCTTCTTTAGCACTGCTCAGTGTTAAATCAATACTATTAGTGTAATGGTGTTGATTTAACAGTGGTATTTTTACTGTGTGTACCACAGTCCTTCCACTCACAGAAAGCCTGAAACGCATATGAAATCGATTAAACACAGATACTGCACTCGCCTGCTTTTCTCCAATCTGTAACAGTCACTCGTTTGTAAACTCAGTCATGGTTATTCATAGTATTTCCACTTTGATATCTGATGGGCTTTAGAAGGTGTCTTATTCATCTTGCTGTTTAGTGTGTTATTTCCTATTGATtgtaaaatgacctgaaaattGCTTGCAACAACAGTAAAGATGAGAAACAGAAGTGAATTATTTGCTCAAACTGTGAAAATACTTAAAGCCAGAAAGCACAGCTGAGAAAACAATCAATGAGCATCTTCATCCATTGCGTCTGCTTCGTATGTCATGGAGCTCGTTAAGCGCTGGCTTAAGCCTCTAACAGCTTTTTGTTTCTCAAAGAAGTGAAATTAGTCCACCAATGTCAGCTTGAGAGGGAGCTTTTCTTCTCAGGTTCTCAGATATGTAGATACCGTAGCTTAAGCGCAGTGAGGCAGGAGGAACGGACTGAACTCGGGAAGGTTGCCTTTTCTCTCCAGGCCGCAGGGCTTTTTATCTGTGGGAGAATGGCACAGGTCAAGGAACAATTTGGATCTCAGAAAGCGCCGGTACGAATCGTTTTCCATCAGTGTGAAAATCTTGTTTTGGGCTTCTTCAAAACAGCTAGCGTCAATCTTTTCCAGATTGCTCCTGGTTTCTTCTCTTGTTGCTGAGTCCAGGTTGACCTGAAGTGTTGAAGAACAATTGCATATTTTTAACATAGAGAACAAAGAAAACATGCTATATGgttttaaacttgttttattaattGGTTGATCAGAGTAGAAAGGGTGGTGTCTCACCTCTTTTGGCGAGTCGACACTGACATAGTGCTCAAAGATCTGTTTGGCTTTGGCTTCCATCTGTTTTGCAGGCGTCCTCTTGAAGTCCTCACAAGCCTCCCAGAACTCAATGTTCTCCTGGCTGAACTCCGACTTCAAAAAGGCTGTAAATGCGGCCCGTCCAactaaaaacaaagaagaaacaAAGTTGCCGTCAGTTCTACTATCCTGTCACTCATTTACACCTGCCTACATGATTCATGTCTCAGCAGACCAGGCCCTGTTTCCATTAACTCAAGGGCAAGTCATAAAATCTTACGTCACGTGAATGGACTTTGCCTCAGACTATCTAACTTTATTCTCTGAGGAAGACACGGGTGACGGGACGGGTGATAGGCTGGGTGACGGGGTGGGTGGAGTGGGGAGTCTGAAGCCTCTAAGGATGTTTGGAAAACTTGAAGAGATCAGTGTCCAGGCTCTGGGCAGATTCTCAGAAAGTCAGGGCTCCTCAGCTCTGTCCCTCTGGTGGTTGACCCCTAAGGGCCTAACAGAGCAGAACATACAGGCTATTTAGGGGCCACCCAGGGCAGGCTGTGGACACGTAGCACACGTCCTGAAGCCTGAGAAAACAGCCGCAAGGCACACGCTCTCTTAAAACAAGAACATTAAATGTGTCAAGGGCACCGTGACTGCGAATCCGAGCGTCACATTAATCCACAATCAGCTCACCACTGCGTCGCTCACTTTCAGTCCCACTGTGACTGAAAAACGCCTCTCTAATCAGTCTCACTTTGTTTGTATAAGACTCAGTATCTTTCATTTCATGAATTGGACACTTACCATCATTTTTAATCAAGTTGTTAAATGATGTCTTCCATTTCTCAGCTTCAACAGGAGCGATGCTataaaagaatagaaaa

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04979 Cholesterol metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU158199 True 2217 lncRNA 0.42 2 40360340 40362577

Neighbor

gene id symbol gene type direction distance location
LOC103040381 rgs5a,LOC108441543,LOC107732440,LOC107564083,LOC107685321,LOC107684230 coding upstream 20666 40318758 ~ 40339674 (+)
LOC103040699 LOC103040699,LOC108440142,LOC108271632 coding upstream 83851 40273386 ~ 40276489 (+)
LOC103027818 rgs8,LOC108441527,LOC108271678,LOC107711118,LOC107551030,LOC107732448,LOC107564081 coding upstream 101121 40224051 ~ 40259219 (+)
LOC103028032 brinp3a.1,LOC108441513,LOC107585174,LOC107711117,LOC107732447,LOC107685317 coding upstream 350804 39954473 ~ 40009536 (+)
LOC103022251 brinp3a.2,LOC108440126,LOC107711116,LOC107732449,LOC107685312,LOC107667973,LOC107585215 coding upstream 766317 39517500 ~ 39594023 (+)
nos1ap nos1ap,LOC107711121,LOC107551033 coding downstream 54750 40417327 ~ 40567138 (+)
c13h1orf226 nos1ap coding downstream 217799 40580376 ~ 40600295 (+)
uap1 uap1,LOC107551035,LOC107724142 coding downstream 275208 40637785 ~ 40653811 (+)
ddr2 ddr2,ddr2a,LOC107551036,LOC107692417,LOC107724144 coding downstream 295823 40658400 ~ 40709827 (+)
hsd17b7 hsd17b7,LOC107551038,LOC107724130 coding downstream 348329 40710906 ~ 40718070 (+)
G117111 NA non-coding upstream 223613 40129092 ~ 40136727 (+)
G117108 NA non-coding upstream 268496 40091595 ~ 40091844 (+)
G117102 NA non-coding upstream 322809 40037300 ~ 40037531 (+)
G117071 NA non-coding upstream 512505 39839012 ~ 39847835 (+)
G117025 NA non-coding upstream 861982 39497799 ~ 39498358 (+)
G117152 NA non-coding downstream 204631 40567208 ~ 40580304 (+)
G117154 NA non-coding downstream 256991 40619568 ~ 40620766 (+)
G117156 NA non-coding downstream 261433 40624010 ~ 40630144 (+)
G117183 NA non-coding downstream 454599 40817176 ~ 40821330 (+)
G117299 NA non-coding downstream 728924 41091501 ~ 41091992 (+)
G116997 NA other upstream 1000952 39358871 ~ 39359388 (+)
LOC103036266 LOC108441345 other upstream 1965810 38390277 ~ 38394530 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other upstream 2748018 37524851 ~ 37612322 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other upstream 3239013 37100014 ~ 37121327 (+)
LOC103044253 LOC108440873 other upstream 3646456 36657392 ~ 36713884 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 436894 40799471 ~ 40808545 (+)
fam183a NA other downstream 796610 41159187 ~ 41166159 (+)
pomgnt1 pomgnt1,LOC102776429 other downstream 990924 41353501 ~ 41367729 (+)
G117642 NA other downstream 1989230 42351807 ~ 42355784 (+)

Expression


Co-expression Network