G117154


Basic Information

Item Value
gene id G117154
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 40619568 ~ 40620766 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU158217
ATGATCATTTAGCATTAATAATACATCATTTGTGCAGCGAATCTCTTGAGCATAGACGTCCTCgaattttaattatacattatacactgCAGTTAATATAACAGAACTCCGTTTAAactcttggtaaaaaaaaagggggcAATGCTTGAATATATGAGTGcgatttatttttaatgcagaTGCCAAGACTCCACATATTCGCTGCCTGTCAGAACAAGCACTTTCTGAAATTGTTGTTCATCGATATTCAGCTCAGCCTTGAATTCTTGATCCTGACAGCGTACGTTCGTGCAGATTGTTTGCTTGCTCGCCATAATCTACAAGAAAACAGCTGTAAAAAAATGGGTGGCTGGTGTGTGAGGAGACACGTTCAGTGCAGCTTCAGCAGGTGGCTGTTCAGATGCATGATAATCCACAGGTGTAGCCTCAGAGTTTGAACCCGAGGTATTGACCAGGTGCAGCGAGCATGAAGCGAGGAGTGAATAGGTACTCAGGTGATCAACAGGCAACACCTGACCCAAAACGGATCCtgcattcctctctctctctctgcggcCGTTTCAGCTTGTGTACACAATTCCAGCACAGACGGGTTTGTGCAGTCATGCCTGAGTCTGAGGCAAGAACAGAGGGTTGCCAAGTAATGCAGTAGCAAGATCTATCTCCTGAATTCTGCATAGAGCCGTGCCATTTTCTCCAGTGAATATTTATGGCATTCGAGCTGCCACGGTGAAACAGCTAGTGATCCCTTTCCTTTTGTCATTCATTCGCTTCAAGTGCAGATGTGGAGAGTGATTGTACGCCCGCAAATAGACCAGACACTCTCAGCTTCTTTTATTAGACCAGCTGTAAAATGTGGGGCCATAAACAGGAGGCATGTATGTAGCTCTACAGAGGAACTACAGGAGGCCAGTAATATAGACGCTCTACAGGGGAGGGTCTGGACTGCATTCTCCGTCTGTAGTGAACCTACACAACATGACAGGCAGATAAATGAGAGAGAGGGGTTACAAGAAACATGAGATTACAAATTCAAAACATTTTCTATATAAGGTCTGTCTGTATGATAAGTTAACAGCTAAAATCTtgtgtgtatttgcatttttgtttttgacatggttgtgttttgtttttatacagggttcatacacctttATCTAATACATTTCAATACATTATGATTTAATCATGACTTTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158217 True 1199 lncRNA 0.42 1 40619568 40620766

Neighbor

gene id symbol gene type direction distance location
c13h1orf226 nos1ap coding upstream 19273 40580376 ~ 40600295 (+)
nos1ap nos1ap,LOC107711121,LOC107551033 coding upstream 52430 40417327 ~ 40567138 (+)
LOC103040381 rgs5a,LOC108441543,LOC107732440,LOC107564083,LOC107685321,LOC107684230 coding upstream 279894 40318758 ~ 40339674 (+)
LOC103040699 LOC103040699,LOC108440142,LOC108271632 coding upstream 343079 40273386 ~ 40276489 (+)
LOC103027818 rgs8,LOC108441527,LOC108271678,LOC107711118,LOC107551030,LOC107732448,LOC107564081 coding upstream 360349 40224051 ~ 40259219 (+)
uap1 uap1,LOC107551035,LOC107724142 coding downstream 17019 40637785 ~ 40653811 (+)
ddr2 ddr2,ddr2a,LOC107551036,LOC107692417,LOC107724144 coding downstream 37634 40658400 ~ 40709827 (+)
hsd17b7 hsd17b7,LOC107551038,LOC107724130 coding downstream 90140 40710906 ~ 40718070 (+)
LOC103035173 serbp1,LOC107594603,LOC107758366,LOC107692416 coding downstream 104891 40725657 ~ 40732566 (+)
LOC103042225 NA coding downstream 156879 40777645 ~ 40783201 (+)
G117152 NA non-coding upstream 39264 40567208 ~ 40580304 (+)
G117147 NA non-coding upstream 256991 40360340 ~ 40362577 (+)
G117111 NA non-coding upstream 482841 40129092 ~ 40136727 (+)
G117108 NA non-coding upstream 527724 40091595 ~ 40091844 (+)
G117102 NA non-coding upstream 582037 40037300 ~ 40037531 (+)
G117156 NA non-coding downstream 3244 40624010 ~ 40630144 (+)
G117183 NA non-coding downstream 196410 40817176 ~ 40821330 (+)
G117299 NA non-coding downstream 470735 41091501 ~ 41091992 (+)
G117324 ap1m3,LOC108441657,LOC108271949,LOC103463064,LOC106528254,LOC107724146,LOC103137203 non-coding downstream 605409 41226175 ~ 41233853 (+)
LOC111193789 NA non-coding downstream 684557 41305323 ~ 41306911 (+)
G116997 NA other upstream 1260180 39358871 ~ 39359388 (+)
LOC103036266 LOC108441345 other upstream 2225038 38390277 ~ 38394530 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other upstream 3007246 37524851 ~ 37612322 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other upstream 3498241 37100014 ~ 37121327 (+)
LOC103044253 LOC108440873 other upstream 3905684 36657392 ~ 36713884 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 178705 40799471 ~ 40808545 (+)
fam183a NA other downstream 538421 41159187 ~ 41166159 (+)
pomgnt1 pomgnt1,LOC102776429 other downstream 732735 41353501 ~ 41367729 (+)
G117642 NA other downstream 1731041 42351807 ~ 42355784 (+)

Expression


Co-expression Network